Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Gm11814-201ENSMUST00000119515 929 ntBASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Gm27847-201ENSMUST00000183711 107 ntBASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Gm27375-201ENSMUST00000183799 107 ntBASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Gm7287-201ENSMUST00000205267 602 ntBASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Gm7561-201ENSMUST00000211203 886 ntBASIC12.17□□□□□ -0.46
Col28a1Q2UY11 AC122305.4-201ENSMUST00000216159 1206 ntBASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Gm6091-201ENSMUST00000098307 165 ntBASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Abhd6-203ENSMUST00000225234 1958 ntBASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC12.17□□□□□ -0.46
Col28a1Q2UY11 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 AC156031.2-201ENSMUST00000213107 3310 ntBASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Gm43174-201ENSMUST00000195914 2445 ntBASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Mir1247-201ENSMUST00000116706 82 ntBASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Gm12928-201ENSMUST00000117115 573 ntBASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Gm9061-201ENSMUST00000182707 1006 ntBASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Gm18916-201ENSMUST00000198264 1246 ntBASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Gm9728-201ENSMUST00000200197 1055 ntBASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Gm35960-201ENSMUST00000202712 767 ntBASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 AC159896.2-201ENSMUST00000214753 269 ntBASIC12.16□□□□□ -0.46
Col28a1Q2UY11 AC154319.1-201ENSMUST00000216330 312 ntBASIC12.16□□□□□ -0.46
Col28a1Q2UY11 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 AL589735.1-201ENSMUST00000224353 270 ntBASIC12.16□□□□□ -0.46
Col28a1Q2UY11 AC192088.1-201ENSMUST00000227561 301 ntBASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC12.16□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms