Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Gm11475-201ENSMUST00000118482 476 ntBASIC18.78■□□□□ 0.6
Col17a1Q07563 St8sia3os-204ENSMUST00000140903 383 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Gm26313-201ENSMUST00000157770 308 ntBASIC18.78■□□□□ 0.6
Col17a1Q07563 Gm43811-201ENSMUST00000202862 695 ntBASIC18.78■□□□□ 0.6
Col17a1Q07563 1600002K03Rik-201ENSMUST00000041882 678 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Col17a1Q07563 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Gpr143-201ENSMUST00000026383 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Nit1-203ENSMUST00000111296 1394 ntTSL 5 BASIC18.78■□□□□ 0.6
Col17a1Q07563 Gm29295-201ENSMUST00000190004 1371 ntTSL 5 BASIC18.78■□□□□ 0.6
Col17a1Q07563 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC18.78■□□□□ 0.6
Col17a1Q07563 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC18.78■□□□□ 0.6
Col17a1Q07563 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col17a1Q07563 Gm14497-201ENSMUST00000119537 580 ntBASIC18.77■□□□□ 0.6
Col17a1Q07563 Gm8152-201ENSMUST00000120842 637 ntBASIC18.77■□□□□ 0.6
Col17a1Q07563 Junos-202ENSMUST00000125438 559 ntTSL 2 BASIC18.77■□□□□ 0.6
Col17a1Q07563 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col17a1Q07563 Gm15540-201ENSMUST00000136052 674 ntTSL 2 BASIC18.77■□□□□ 0.6
Col17a1Q07563 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col17a1Q07563 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
Col17a1Q07563 Auts2-216ENSMUST00000185450 144 ntTSL 5 BASIC18.77■□□□□ 0.6
Col17a1Q07563 Nabp1-206ENSMUST00000188051 680 ntTSL 3 BASIC18.77■□□□□ 0.6
Col17a1Q07563 Gstz1-203ENSMUST00000220574 971 ntTSL 2 BASIC18.77■□□□□ 0.6
Col17a1Q07563 Klk1b24-201ENSMUST00000073713 878 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col17a1Q07563 Klk1b21-201ENSMUST00000085455 871 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col17a1Q07563 Ptges3l-201ENSMUST00000093933 748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col17a1Q07563 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Col17a1Q07563 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Col17a1Q07563 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col17a1Q07563 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Col17a1Q07563 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col17a1Q07563 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col17a1Q07563 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Col17a1Q07563 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col17a1Q07563 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Col17a1Q07563 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col17a1Q07563 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col17a1Q07563 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col17a1Q07563 Sfi1-204ENSMUST00000118627 831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col17a1Q07563 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC18.77■□□□□ 0.59
Col17a1Q07563 Gm16228-201ENSMUST00000162286 809 ntBASIC18.77■□□□□ 0.59
Col17a1Q07563 Gm7765-201ENSMUST00000182585 974 ntBASIC18.77■□□□□ 0.59
Col17a1Q07563 Krtap6-3-202ENSMUST00000185581 520 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
Col17a1Q07563 CT025689.1-201ENSMUST00000225214 283 ntBASIC18.77■□□□□ 0.59
Col17a1Q07563 Rpl9-201ENSMUST00000057885 738 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col17a1Q07563 Krtap6-3-201ENSMUST00000079151 444 ntBASIC18.77■□□□□ 0.59
Col17a1Q07563 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col17a1Q07563 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC18.77■□□□□ 0.59
Col17a1Q07563 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col17a1Q07563 A430018G15Rik-201ENSMUST00000124210 1314 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Col17a1Q07563 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Col17a1Q07563 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Col17a1Q07563 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col17a1Q07563 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col17a1Q07563 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col17a1Q07563 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC18.76■□□□□ 0.59
Col17a1Q07563 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col17a1Q07563 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col17a1Q07563 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col17a1Q07563 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col17a1Q07563 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col17a1Q07563 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col17a1Q07563 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col17a1Q07563 Gm25492-201ENSMUST00000157383 129 ntBASIC18.76■□□□□ 0.59
Col17a1Q07563 Pdc-201ENSMUST00000165062 1246 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Col17a1Q07563 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col17a1Q07563 Gm45783-201ENSMUST00000210877 656 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
Col17a1Q07563 4933407I05Rik-202ENSMUST00000213467 420 ntTSL 2 BASIC18.76■□□□□ 0.59
Col17a1Q07563 Gm2594-201ENSMUST00000214774 742 ntBASIC18.76■□□□□ 0.59
Col17a1Q07563 CT009546.1-201ENSMUST00000222573 1120 ntBASIC18.76■□□□□ 0.59
Col17a1Q07563 Ppm1a-205ENSMUST00000222896 1103 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col17a1Q07563 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col17a1Q07563 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col17a1Q07563 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col17a1Q07563 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Col17a1Q07563 Olfr1156-202ENSMUST00000216191 3300 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Col17a1Q07563 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC18.75■□□□□ 0.59
Col17a1Q07563 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Zbtb43-203ENSMUST00000113156 1828 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Gm9095-201ENSMUST00000117607 881 ntBASIC18.75■□□□□ 0.59
Col17a1Q07563 Gm9097-201ENSMUST00000120514 880 ntBASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms