Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm12579-201ENSMUST00000118040 783 ntBASIC14.48□□□□□ -0.09
Col1a1P11087 Gm8731-201ENSMUST00000118088 412 ntBASIC14.48□□□□□ -0.09
Col1a1P11087 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Gm15566-201ENSMUST00000121130 590 ntBASIC14.48□□□□□ -0.09
Col1a1P11087 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC14.48□□□□□ -0.09
Col1a1P11087 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC14.48□□□□□ -0.09
Col1a1P11087 Mir1956-201ENSMUST00000157748 65 ntBASIC14.48□□□□□ -0.09
Col1a1P11087 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC14.48□□□□□ -0.09
Col1a1P11087 Gm37028-201ENSMUST00000194276 107 ntBASIC14.48□□□□□ -0.09
Col1a1P11087 D3Ertd751e-215ENSMUST00000195882 680 ntAPPRIS P3 TSL 2 BASIC14.48□□□□□ -0.09
Col1a1P11087 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Col1a1P11087 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Col1a1P11087 AC238940.1-201ENSMUST00000225106 1858 ntBASIC14.48□□□□□ -0.09
Col1a1P11087 Gm43721-201ENSMUST00000199677 2313 ntBASIC14.48□□□□□ -0.09
Col1a1P11087 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC14.48□□□□□ -0.09
Col1a1P11087 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC14.48□□□□□ -0.09
Col1a1P11087 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.47□□□□□ -0.09
Col1a1P11087 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC14.47□□□□□ -0.09
Col1a1P11087 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Gm45638-201ENSMUST00000211507 2878 ntBASIC14.47□□□□□ -0.09
Col1a1P11087 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC14.47□□□□□ -0.09
Col1a1P11087 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Col1a1P11087 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC14.47□□□□□ -0.09
Col1a1P11087 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC14.47□□□□□ -0.09
Col1a1P11087 Gm44711-201ENSMUST00000205414 1264 ntBASIC14.47□□□□□ -0.09
Col1a1P11087 AC115122.1-201ENSMUST00000224850 1040 ntBASIC14.47□□□□□ -0.09
Col1a1P11087 AC174797.2-202ENSMUST00000225729 568 ntBASIC14.47□□□□□ -0.09
Col1a1P11087 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Gm6430-201ENSMUST00000054664 1248 ntBASIC14.47□□□□□ -0.09
Col1a1P11087 Gm9873-201ENSMUST00000063891 1097 ntBASIC14.47□□□□□ -0.09
Col1a1P11087 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
Col1a1P11087 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC14.47□□□□□ -0.09
Col1a1P11087 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col1a1P11087 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col1a1P11087 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col1a1P11087 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col1a1P11087 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col1a1P11087 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
Col1a1P11087 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col1a1P11087 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Col1a1P11087 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col1a1P11087 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col1a1P11087 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col1a1P11087 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col1a1P11087 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col1a1P11087 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC14.46□□□□□ -0.09
Col1a1P11087 Gm11949-201ENSMUST00000117640 372 ntBASIC14.46□□□□□ -0.09
Col1a1P11087 Gm1848-201ENSMUST00000120711 789 ntBASIC14.46□□□□□ -0.09
Col1a1P11087 Gm22442-201ENSMUST00000157256 144 ntBASIC14.46□□□□□ -0.09
Col1a1P11087 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC14.46□□□□□ -0.09
Col1a1P11087 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC14.46□□□□□ -0.09
Col1a1P11087 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col1a1P11087 Gm6771-201ENSMUST00000182716 1001 ntBASIC14.46□□□□□ -0.09
Col1a1P11087 Gm5714-201ENSMUST00000197343 566 ntBASIC14.46□□□□□ -0.09
Col1a1P11087 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col1a1P11087 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC14.46□□□□□ -0.09
Col1a1P11087 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Col1a1P11087 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Col1a1P11087 Gm18782-201ENSMUST00000209023 1399 ntBASIC14.46□□□□□ -0.09
Col1a1P11087 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col1a1P11087 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col1a1P11087 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Col1a1P11087 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col1a1P11087 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col1a1P11087 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col1a1P11087 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col1a1P11087 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col1a1P11087 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col1a1P11087 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col1a1P11087 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col1a1P11087 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col1a1P11087 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col1a1P11087 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col1a1P11087 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col1a1P11087 n-R5s64-201ENSMUST00000102019 119 ntBASIC14.45□□□□□ -0.1
Col1a1P11087 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col1a1P11087 Gm13916-201ENSMUST00000117368 628 ntBASIC14.45□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms