Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Gm9899-201ENSMUST00000065519 555 ntBASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Upf3bQ3ULL6 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Gm44942-201ENSMUST00000096093 2072 ntBASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Gm5940-201ENSMUST00000117582 1068 ntBASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Gm13736-201ENSMUST00000119272 253 ntBASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Gm13786-201ENSMUST00000122371 333 ntBASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Gm10608-202ENSMUST00000213924 676 ntBASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Gm7399-201ENSMUST00000032395 858 ntBASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Gm8399-201ENSMUST00000082300 1117 ntBASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Gm3756-201ENSMUST00000169182 1355 ntBASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Upf3bQ3ULL6 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 AC159195.1-201ENSMUST00000225867 2086 ntBASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms