Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 AL645783.1-201ENSMUST00000221416 1832 ntBASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Gm8652-201ENSMUST00000181363 964 ntBASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Gm37424-201ENSMUST00000191727 561 ntBASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Gm18636-201ENSMUST00000218846 1066 ntBASIC12.19□□□□□ -0.46
Col28a1Q2UY11 AC173210.1-201ENSMUST00000222341 1131 ntBASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Zscan30-202ENSMUST00000224144 1458 ntBASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col28a1Q2UY11 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Gm37324-201ENSMUST00000194500 4504 ntBASIC12.18□□□□□ -0.46
Col28a1Q2UY11 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Gm4735-201ENSMUST00000138679 1302 ntBASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Gm5855-201ENSMUST00000200240 1305 ntBASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Mup-ps23-201ENSMUST00000118063 630 ntBASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Gm14660-201ENSMUST00000119809 575 ntBASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Gm15429-201ENSMUST00000151268 798 ntBASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Snora78-201ENSMUST00000158630 128 ntBASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Gm27731-201ENSMUST00000185192 107 ntBASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 CT025678.1-201ENSMUST00000214795 2972 ntBASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 AC125117.1-201ENSMUST00000228121 468 ntBASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Col28a1Q2UY11 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 65.9 ms