Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC14.8□□□□□ -0.04
Col3a1P08121 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 Gm8566-201ENSMUST00000120174 465 ntBASIC14.8□□□□□ -0.04
Col3a1P08121 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
Col3a1P08121 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Col3a1P08121 Gm9211-201ENSMUST00000182882 975 ntBASIC14.8□□□□□ -0.04
Col3a1P08121 AC098716.1-201ENSMUST00000213527 703 ntBASIC14.8□□□□□ -0.04
Col3a1P08121 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC14.8□□□□□ -0.04
Col3a1P08121 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Col3a1P08121 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Col3a1P08121 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC14.8□□□□□ -0.04
Col3a1P08121 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC14.8□□□□□ -0.04
Col3a1P08121 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC14.8□□□□□ -0.04
Col3a1P08121 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Col3a1P08121 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Col3a1P08121 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC14.79□□□□□ -0.04
Col3a1P08121 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Gm23912-201ENSMUST00000104687 87 ntBASIC14.79□□□□□ -0.04
Col3a1P08121 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Col3a1P08121 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC14.79□□□□□ -0.04
Col3a1P08121 Gm9062-201ENSMUST00000117712 727 ntBASIC14.79□□□□□ -0.04
Col3a1P08121 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Col3a1P08121 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Col3a1P08121 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Col3a1P08121 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 AC141438.2-201ENSMUST00000215068 271 ntBASIC14.79□□□□□ -0.04
Col3a1P08121 AC135114.1-201ENSMUST00000228682 270 ntBASIC14.79□□□□□ -0.04
Col3a1P08121 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Ntng1-201ENSMUST00000051253 327 ntBASIC14.79□□□□□ -0.04
Col3a1P08121 Gm26448-201ENSMUST00000082446 203 ntBASIC14.79□□□□□ -0.04
Col3a1P08121 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Col3a1P08121 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col3a1P08121 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC14.78□□□□□ -0.04
Col3a1P08121 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Col3a1P08121 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Gm27194-201ENSMUST00000175753 2936 ntBASIC14.78□□□□□ -0.04
Col3a1P08121 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Gm8199-201ENSMUST00000121323 823 ntBASIC14.78□□□□□ -0.04
Col3a1P08121 Gm23085-201ENSMUST00000157849 293 ntBASIC14.78□□□□□ -0.04
Col3a1P08121 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC14.78□□□□□ -0.04
Col3a1P08121 Gm8956-201ENSMUST00000203939 825 ntBASIC14.78□□□□□ -0.04
Col3a1P08121 Gm45219-201ENSMUST00000205602 465 ntBASIC14.78□□□□□ -0.04
Col3a1P08121 Gm807-202ENSMUST00000224929 408 ntBASIC14.78□□□□□ -0.04
Col3a1P08121 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Col3a1P08121 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC14.78□□□□□ -0.04
Col3a1P08121 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
Col3a1P08121 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
Col3a1P08121 AC159195.1-201ENSMUST00000225867 2086 ntBASIC14.78□□□□□ -0.04
Col3a1P08121 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col3a1P08121 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col3a1P08121 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col3a1P08121 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Col3a1P08121 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Col3a1P08121 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms