Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Gm14608-201ENSMUST00000120030 1553 ntBASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Mir686-201ENSMUST00000102174 109 ntBASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Gm5187-201ENSMUST00000117317 991 ntBASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Gm16479-201ENSMUST00000121706 932 ntBASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Gm5370-201ENSMUST00000187187 574 ntBASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Gm43045-201ENSMUST00000198725 2095 ntBASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Gm5620-201ENSMUST00000077991 1348 ntBASIC11.85□□□□□ -0.51
Trim3Q9R1R2 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Gm26684-202ENSMUST00000228229 8257 ntBASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Gm13392-201ENSMUST00000117708 150 ntBASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Gm12539-201ENSMUST00000121549 1098 ntBASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Trim3Q9R1R2 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Trim3Q9R1R2 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Trim3Q9R1R2 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Trim3Q9R1R2 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim3Q9R1R2 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim3Q9R1R2 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Trim3Q9R1R2 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim3Q9R1R2 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Trim3Q9R1R2 AC101945.2-201ENSMUST00000227886 1377 ntBASIC11.83□□□□□ -0.52
Trim3Q9R1R2 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim3Q9R1R2 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim3Q9R1R2 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC11.83□□□□□ -0.52
Trim3Q9R1R2 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC11.83□□□□□ -0.52
Trim3Q9R1R2 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Trim3Q9R1R2 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim3Q9R1R2 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Trim3Q9R1R2 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC11.83□□□□□ -0.52
Trim3Q9R1R2 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC11.83□□□□□ -0.52
Trim3Q9R1R2 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC11.83□□□□□ -0.52
Trim3Q9R1R2 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 58.4 ms