Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
Trim28Q62318 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC16.19■□□□□ 0.18
Trim28Q62318 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
Trim28Q62318 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC16.19■□□□□ 0.18
Trim28Q62318 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC16.19■□□□□ 0.18
Trim28Q62318 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
Trim28Q62318 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Trim28Q62318 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Gm37437-201ENSMUST00000194451 1937 ntBASIC16.19■□□□□ 0.18
Trim28Q62318 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
Trim28Q62318 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Trim28Q62318 Gm7049-201ENSMUST00000223520 1712 ntBASIC16.19■□□□□ 0.18
Trim28Q62318 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC16.19■□□□□ 0.18
Trim28Q62318 Gm9333-201ENSMUST00000205452 1323 ntBASIC16.19■□□□□ 0.18
Trim28Q62318 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Trim28Q62318 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
Trim28Q62318 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC16.18■□□□□ 0.18
Trim28Q62318 Gm37019-201ENSMUST00000192133 2134 ntBASIC16.18■□□□□ 0.18
Trim28Q62318 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC16.18■□□□□ 0.18
Trim28Q62318 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC16.18■□□□□ 0.18
Trim28Q62318 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC16.18■□□□□ 0.18
Trim28Q62318 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC16.18■□□□□ 0.18
Trim28Q62318 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC16.18■□□□□ 0.18
Trim28Q62318 Gm18038-201ENSMUST00000197900 485 ntBASIC16.18■□□□□ 0.18
Trim28Q62318 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC16.18■□□□□ 0.18
Trim28Q62318 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Gm44711-201ENSMUST00000205414 1264 ntBASIC16.18■□□□□ 0.18
Trim28Q62318 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC16.18■□□□□ 0.18
Trim28Q62318 Gm17827-201ENSMUST00000211825 742 ntBASIC16.18■□□□□ 0.18
Trim28Q62318 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC16.18■□□□□ 0.18
Trim28Q62318 Nsd1-205ENSMUST00000224693 852 ntBASIC16.18■□□□□ 0.18
Trim28Q62318 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC16.18■□□□□ 0.18
Trim28Q62318 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC16.18■□□□□ 0.18
Trim28Q62318 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Gm5525-201ENSMUST00000190438 1312 ntBASIC16.18■□□□□ 0.18
Trim28Q62318 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC16.18■□□□□ 0.18
Trim28Q62318 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Trim28Q62318 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim28Q62318 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Trim28Q62318 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Gm37131-201ENSMUST00000192502 1561 ntBASIC16.17■□□□□ 0.18
Trim28Q62318 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Gm5780-201ENSMUST00000217774 1834 ntBASIC16.17■□□□□ 0.18
Trim28Q62318 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC16.17■□□□□ 0.18
Trim28Q62318 Gm27530-201ENSMUST00000184096 98 ntBASIC16.17■□□□□ 0.18
Trim28Q62318 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC16.17■□□□□ 0.18
Trim28Q62318 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
Trim28Q62318 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC16.17■□□□□ 0.18
Trim28Q62318 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Trim28Q62318 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Trim28Q62318 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Gm44443-201ENSMUST00000204396 5633 ntBASIC16.17■□□□□ 0.18
Trim28Q62318 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC16.17■□□□□ 0.18
Trim28Q62318 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim28Q62318 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Trim28Q62318 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC16.16■□□□□ 0.18
Trim28Q62318 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim28Q62318 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms