Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Usf1Q61069 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Usf1Q61069 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Usf1Q61069 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC11.43□□□□□ -0.58
Usf1Q61069 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC11.43□□□□□ -0.58
Usf1Q61069 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC11.43□□□□□ -0.58
Usf1Q61069 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC11.43□□□□□ -0.58
Usf1Q61069 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC11.43□□□□□ -0.58
Usf1Q61069 Gm25881-201ENSMUST00000157783 103 ntBASIC11.43□□□□□ -0.58
Usf1Q61069 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Usf1Q61069 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Usf1Q61069 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC11.43□□□□□ -0.58
Usf1Q61069 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC11.43□□□□□ -0.58
Usf1Q61069 Gm8365-201ENSMUST00000197334 648 ntBASIC11.43□□□□□ -0.58
Usf1Q61069 Gm42937-201ENSMUST00000197360 752 ntBASIC11.43□□□□□ -0.58
Usf1Q61069 Gm17827-201ENSMUST00000211825 742 ntBASIC11.43□□□□□ -0.58
Usf1Q61069 AC133602.1-201ENSMUST00000227510 509 ntBASIC11.43□□□□□ -0.58
Usf1Q61069 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Gm9996-201ENSMUST00000070359 913 ntBASIC11.43□□□□□ -0.58
Usf1Q61069 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC11.43□□□□□ -0.58
Usf1Q61069 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC11.43□□□□□ -0.58
Usf1Q61069 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Usf1Q61069 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Gm2420-202ENSMUST00000202224 2249 ntBASIC11.43□□□□□ -0.58
Usf1Q61069 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Usf1Q61069 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Usf1Q61069 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC11.43□□□□□ -0.58
Usf1Q61069 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
Usf1Q61069 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC11.42□□□□□ -0.58
Usf1Q61069 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Usf1Q61069 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
Usf1Q61069 AC166491.1-201ENSMUST00000227053 2308 ntBASIC11.42□□□□□ -0.58
Usf1Q61069 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC11.42□□□□□ -0.58
Usf1Q61069 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC11.42□□□□□ -0.58
Usf1Q61069 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC11.42□□□□□ -0.58
Usf1Q61069 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC11.42□□□□□ -0.58
Usf1Q61069 Gm270-201ENSMUST00000223010 976 ntBASIC11.42□□□□□ -0.58
Usf1Q61069 AC154252.2-201ENSMUST00000223593 767 ntBASIC11.42□□□□□ -0.58
Usf1Q61069 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Usf1Q61069 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Usf1Q61069 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Usf1Q61069 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC11.42□□□□□ -0.58
Usf1Q61069 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usf1Q61069 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC11.41□□□□□ -0.58
Usf1Q61069 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC11.41□□□□□ -0.58
Usf1Q61069 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Usf1Q61069 AC154725.1-201ENSMUST00000224826 1961 ntBASIC11.41□□□□□ -0.58
Usf1Q61069 Acot6-202ENSMUST00000222921 3622 ntBASIC11.41□□□□□ -0.58
Usf1Q61069 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
Usf1Q61069 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 66.6 ms