Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm11450-201ENSMUST00000121144 333 ntBASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm5732-201ENSMUST00000182596 1007 ntBASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm19287-201ENSMUST00000203190 358 ntBASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm10076-201ENSMUST00000073238 384 ntBASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Retreg1-206ENSMUST00000228306 1430 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 H2-Q3-201ENSMUST00000172583 608 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm29615-201ENSMUST00000185371 697 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm28224-201ENSMUST00000186078 697 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm29001-201ENSMUST00000186177 697 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm28292-201ENSMUST00000186593 697 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm28101-201ENSMUST00000187608 697 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm29076-201ENSMUST00000187689 697 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm28302-201ENSMUST00000187931 697 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm28646-201ENSMUST00000188220 697 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm28205-201ENSMUST00000189177 697 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm29032-201ENSMUST00000189797 697 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm28695-201ENSMUST00000190300 697 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm37448-201ENSMUST00000192795 697 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm45550-201ENSMUST00000209380 946 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm10312-201ENSMUST00000078515 489 ntBASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Ccdc88aQ5SNZ0 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm6039-201ENSMUST00000121667 1250 ntBASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm8492-201ENSMUST00000182375 987 ntBASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Ighv10-1-201ENSMUST00000103492 359 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm27196-201ENSMUST00000184787 2582 ntBASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc88aQ5SNZ0 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc88aQ5SNZ0 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc88aQ5SNZ0 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Ccdc88aQ5SNZ0 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc88aQ5SNZ0 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Ccdc88aQ5SNZ0 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc88aQ5SNZ0 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Ccdc88aQ5SNZ0 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Ccdc88aQ5SNZ0 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc88aQ5SNZ0 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc88aQ5SNZ0 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC14.3□□□□□ -0.12
Ccdc88aQ5SNZ0 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc88aQ5SNZ0 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc88aQ5SNZ0 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc88aQ5SNZ0 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ccdc88aQ5SNZ0 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms