Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
Trim40Q3UWA4 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim40Q3UWA4 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim40Q3UWA4 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Trim40Q3UWA4 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Trim40Q3UWA4 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim40Q3UWA4 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim40Q3UWA4 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC11.79□□□□□ -0.52
Trim40Q3UWA4 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Trim40Q3UWA4 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Trim40Q3UWA4 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC11.79□□□□□ -0.52
Trim40Q3UWA4 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Gm43984-201ENSMUST00000204572 2864 ntBASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Gm15376-201ENSMUST00000122258 783 ntBASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Gm26464-201ENSMUST00000157094 305 ntBASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Mir6956-201ENSMUST00000183598 62 ntBASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Mir7684-201ENSMUST00000183858 60 ntBASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Mir8102-201ENSMUST00000184148 139 ntBASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Gm42550-201ENSMUST00000201553 960 ntBASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 AC155258.1-201ENSMUST00000219303 253 ntBASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Gm4735-201ENSMUST00000138679 1302 ntBASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Gm5855-201ENSMUST00000200240 1305 ntBASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim40Q3UWA4 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim40Q3UWA4 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim40Q3UWA4 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim40Q3UWA4 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim40Q3UWA4 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Trim40Q3UWA4 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
Trim40Q3UWA4 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim40Q3UWA4 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC11.77□□□□□ -0.52
Trim40Q3UWA4 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.52
Trim40Q3UWA4 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Gm42599-201ENSMUST00000201308 469 ntBASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Gm43321-201ENSMUST00000198897 2409 ntBASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
Trim40Q3UWA4 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim40Q3UWA4 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 88.1 ms