Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Upf3bQ3ULL6 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Upf3bQ3ULL6 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
Upf3bQ3ULL6 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Upf3bQ3ULL6 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Upf3bQ3ULL6 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Gm6203-201ENSMUST00000209575 1342 ntBASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Gm11793-201ENSMUST00000120433 981 ntBASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Gm8018-201ENSMUST00000173536 789 ntBASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Gm43118-201ENSMUST00000199149 775 ntBASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Gm6013-201ENSMUST00000212264 699 ntBASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Gm26035-201ENSMUST00000083065 308 ntBASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Retreg1-206ENSMUST00000228306 1430 ntBASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3bQ3ULL6 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Gm10434-201ENSMUST00000101158 471 ntBASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Gm13316-201ENSMUST00000140537 691 ntBASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Mospd4-201ENSMUST00000180618 576 ntBASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Gm43630-201ENSMUST00000201550 776 ntBASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 AC125350.2-201ENSMUST00000224737 727 ntBASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Gm45266-201ENSMUST00000210111 2173 ntBASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Upf3bQ3ULL6 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Rmrp-201ENSMUST00000157463 271 ntBASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 AL732506.1-201ENSMUST00000226420 281 ntBASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Gm43463-201ENSMUST00000195967 1803 ntBASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Upf3bQ3ULL6 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms