Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm21038-201ENSMUST00000222205 1383 ntBASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Gm8062-201ENSMUST00000139696 444 ntBASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Gm2495-201ENSMUST00000191160 466 ntBASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Gm38297-201ENSMUST00000195122 1057 ntBASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Gm42550-201ENSMUST00000201553 960 ntBASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 AC140451.2-201ENSMUST00000228030 664 ntBASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Gm10040-201ENSMUST00000080726 1662 ntBASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col28a1Q2UY11 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Gm9755-201ENSMUST00000032981 1356 ntBASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Gm43858-201ENSMUST00000199418 1778 ntBASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Gm45784-201ENSMUST00000188360 142 ntBASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Gm38230-201ENSMUST00000193572 1159 ntBASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Gm42693-201ENSMUST00000196779 631 ntBASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 AC110817.1-201ENSMUST00000225706 605 ntBASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Col28a1Q2UY11 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Col28a1Q2UY11 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col28a1Q2UY11 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col28a1Q2UY11 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC12.21□□□□□ -0.46
Col28a1Q2UY11 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col28a1Q2UY11 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col28a1Q2UY11 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Col28a1Q2UY11 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col28a1Q2UY11 Gm43727-201ENSMUST00000198021 2647 ntBASIC12.21□□□□□ -0.46
Col28a1Q2UY11 Gm43061-201ENSMUST00000198850 2241 ntBASIC12.21□□□□□ -0.46
Col28a1Q2UY11 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col28a1Q2UY11 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC12.21□□□□□ -0.46
Col28a1Q2UY11 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Gm44831-201ENSMUST00000208469 2989 ntBASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Gm17420-201ENSMUST00000164753 153 ntBASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Gm8463-201ENSMUST00000208573 613 ntBASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Col28a1Q2UY11 Gm10478-201ENSMUST00000084451 396 ntBASIC12.2□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms