Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sox1P53783 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Sox1P53783 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sox1P53783 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC12.81□□□□□ -0.36
Sox1P53783 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC12.81□□□□□ -0.36
Sox1P53783 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Gm6198-201ENSMUST00000191337 2929 ntBASIC12.81□□□□□ -0.36
Sox1P53783 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Gm13019-201ENSMUST00000120000 276 ntBASIC12.81□□□□□ -0.36
Sox1P53783 Gm13315-201ENSMUST00000120376 991 ntBASIC12.81□□□□□ -0.36
Sox1P53783 Gm12246-201ENSMUST00000129126 503 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC12.81□□□□□ -0.36
Sox1P53783 Gm15744-201ENSMUST00000161734 213 ntBASIC12.81□□□□□ -0.36
Sox1P53783 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Sox1P53783 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Gm42937-201ENSMUST00000197360 752 ntBASIC12.81□□□□□ -0.36
Sox1P53783 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC12.81□□□□□ -0.36
Sox1P53783 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC12.81□□□□□ -0.36
Sox1P53783 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Sox1P53783 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Zmiz1os1-202ENSMUST00000225188 1223 ntBASIC12.81□□□□□ -0.36
Sox1P53783 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC12.81□□□□□ -0.36
Sox1P53783 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC12.81□□□□□ -0.36
Sox1P53783 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Sox1P53783 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Sox1P53783 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Sox1P53783 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Sox1P53783 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
Sox1P53783 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sox1P53783 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 AC167013.2-201ENSMUST00000228520 2684 ntBASIC12.8□□□□□ -0.36
Sox1P53783 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC12.8□□□□□ -0.36
Sox1P53783 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC12.8□□□□□ -0.36
Sox1P53783 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC12.8□□□□□ -0.36
Sox1P53783 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC12.8□□□□□ -0.36
Sox1P53783 Gm13954-201ENSMUST00000123441 543 ntTSL 3 BASIC12.8□□□□□ -0.36
Sox1P53783 Rbm3os-201ENSMUST00000124018 839 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Gm16296-201ENSMUST00000159905 325 ntBASIC12.8□□□□□ -0.36
Sox1P53783 Gm20614-201ENSMUST00000177106 632 ntBASIC12.8□□□□□ -0.36
Sox1P53783 Gm7985-201ENSMUST00000183329 981 ntBASIC12.8□□□□□ -0.36
Sox1P53783 Ighv1-48-201ENSMUST00000191795 294 ntBASIC12.8□□□□□ -0.36
Sox1P53783 Ndufc1-204ENSMUST00000193279 315 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
Sox1P53783 Gm43186-201ENSMUST00000198130 824 ntBASIC12.8□□□□□ -0.36
Sox1P53783 Gm4157-201ENSMUST00000211647 679 ntBASIC12.8□□□□□ -0.36
Sox1P53783 AC153961.1-201ENSMUST00000217760 385 ntBASIC12.8□□□□□ -0.36
Sox1P53783 AC153962.2-201ENSMUST00000219417 550 ntBASIC12.8□□□□□ -0.36
Sox1P53783 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC12.8□□□□□ -0.36
Sox1P53783 Gm40879-201ENSMUST00000220759 612 ntBASIC12.8□□□□□ -0.36
Sox1P53783 Ap3s1-202ENSMUST00000224622 978 ntBASIC12.8□□□□□ -0.36
Sox1P53783 AC102368.1-201ENSMUST00000227161 892 ntBASIC12.8□□□□□ -0.36
Sox1P53783 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC12.8□□□□□ -0.36
Sox1P53783 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Sox1P53783 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Sox1P53783 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Sox1P53783 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Sox1P53783 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Sox1P53783 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox1P53783 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox1P53783 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms