Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 Gm9728-201ENSMUST00000200197 1055 ntBASIC13.17□□□□□ -0.3
Usp4P35123 Gm38671-201ENSMUST00000200573 130 ntBASIC13.17□□□□□ -0.3
Usp4P35123 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Usp4P35123 Gm8227-201ENSMUST00000223306 571 ntBASIC13.17□□□□□ -0.3
Usp4P35123 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp4P35123 AC101945.2-201ENSMUST00000227886 1377 ntBASIC13.17□□□□□ -0.3
Usp4P35123 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC13.17□□□□□ -0.3
Usp4P35123 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Zscan30-202ENSMUST00000224144 1458 ntBASIC13.16□□□□□ -0.3
Usp4P35123 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC13.16□□□□□ -0.3
Usp4P35123 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Usp4P35123 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC13.16□□□□□ -0.3
Usp4P35123 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC13.16□□□□□ -0.3
Usp4P35123 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Usp4P35123 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
Usp4P35123 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC13.16□□□□□ -0.3
Usp4P35123 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
Usp4P35123 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Mir6420-201ENSMUST00000185032 102 ntBASIC13.16□□□□□ -0.3
Usp4P35123 Gm29649-201ENSMUST00000185649 419 ntBASIC13.16□□□□□ -0.3
Usp4P35123 Gm5276-201ENSMUST00000196683 1047 ntBASIC13.16□□□□□ -0.3
Usp4P35123 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Usp4P35123 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC13.16□□□□□ -0.3
Usp4P35123 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Usp4P35123 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC13.16□□□□□ -0.3
Usp4P35123 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC13.16□□□□□ -0.3
Usp4P35123 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC13.16□□□□□ -0.3
Usp4P35123 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Usp4P35123 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp4P35123 AL645783.1-201ENSMUST00000221416 1832 ntBASIC13.16□□□□□ -0.3
Usp4P35123 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Gm4735-201ENSMUST00000138679 1302 ntBASIC13.15□□□□□ -0.3
Usp4P35123 Gm5855-201ENSMUST00000200240 1305 ntBASIC13.15□□□□□ -0.3
Usp4P35123 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Usp4P35123 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Usp4P35123 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC13.15□□□□□ -0.3
Usp4P35123 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Gm16342-201ENSMUST00000124025 1025 ntBASIC13.15□□□□□ -0.3
Usp4P35123 Gm8062-201ENSMUST00000139696 444 ntBASIC13.15□□□□□ -0.3
Usp4P35123 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Usp4P35123 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Gm8652-201ENSMUST00000181363 964 ntBASIC13.15□□□□□ -0.3
Usp4P35123 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Usp4P35123 Gm38223-201ENSMUST00000194484 695 ntBASIC13.15□□□□□ -0.3
Usp4P35123 Ighv8-10-201ENSMUST00000199579 358 ntBASIC13.15□□□□□ -0.3
Usp4P35123 Gm9299-201ENSMUST00000206392 1140 ntBASIC13.15□□□□□ -0.3
Usp4P35123 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Usp4P35123 Gm10478-201ENSMUST00000084451 396 ntBASIC13.15□□□□□ -0.3
Usp4P35123 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Usp4P35123 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms