Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC14.06□□□□□ -0.16
Col2a1P28481 Gm24514-201ENSMUST00000174961 285 ntBASIC14.06□□□□□ -0.16
Col2a1P28481 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Gm5732-201ENSMUST00000182596 1007 ntBASIC14.06□□□□□ -0.16
Col2a1P28481 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC14.06□□□□□ -0.16
Col2a1P28481 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Col2a1P28481 Gm43447-201ENSMUST00000198471 1535 ntBASIC14.06□□□□□ -0.16
Col2a1P28481 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC14.06□□□□□ -0.16
Col2a1P28481 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Col2a1P28481 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC14.06□□□□□ -0.16
Col2a1P28481 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Col2a1P28481 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Col2a1P28481 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
Col2a1P28481 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
Col2a1P28481 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC14.06□□□□□ -0.16
Col2a1P28481 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC14.06□□□□□ -0.16
Col2a1P28481 Gm10051-201ENSMUST00000145209 414 ntBASIC14.06□□□□□ -0.16
Col2a1P28481 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC14.06□□□□□ -0.16
Col2a1P28481 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC14.06□□□□□ -0.16
Col2a1P28481 Mir7686-201ENSMUST00000200604 57 ntBASIC14.06□□□□□ -0.16
Col2a1P28481 Gm1821-202ENSMUST00000227415 750 ntBASIC14.06□□□□□ -0.16
Col2a1P28481 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Ginm1-202ENSMUST00000065124 300 ntBASIC14.06□□□□□ -0.16
Col2a1P28481 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col2a1P28481 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Col2a1P28481 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 AC116503.1-201ENSMUST00000215445 2192 ntBASIC14.05□□□□□ -0.16
Col2a1P28481 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 AC091458.1-201ENSMUST00000220902 1361 ntBASIC14.05□□□□□ -0.16
Col2a1P28481 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
Col2a1P28481 Gm12616-201ENSMUST00000118594 382 ntBASIC14.05□□□□□ -0.16
Col2a1P28481 Gm12624-201ENSMUST00000177615 382 ntBASIC14.05□□□□□ -0.16
Col2a1P28481 Gm12621-201ENSMUST00000177760 382 ntBASIC14.05□□□□□ -0.16
Col2a1P28481 Gm12615-201ENSMUST00000177970 382 ntBASIC14.05□□□□□ -0.16
Col2a1P28481 Gm12622-201ENSMUST00000177975 382 ntBASIC14.05□□□□□ -0.16
Col2a1P28481 Gm12627-201ENSMUST00000178412 382 ntBASIC14.05□□□□□ -0.16
Col2a1P28481 Gm12625-201ENSMUST00000179122 382 ntBASIC14.05□□□□□ -0.16
Col2a1P28481 Gm12614-201ENSMUST00000179586 382 ntBASIC14.05□□□□□ -0.16
Col2a1P28481 Gm12613-201ENSMUST00000180323 382 ntBASIC14.05□□□□□ -0.16
Col2a1P28481 Mir6546-201ENSMUST00000184460 62 ntBASIC14.05□□□□□ -0.16
Col2a1P28481 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC14.05□□□□□ -0.16
Col2a1P28481 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 AC159819.2-201ENSMUST00000216151 342 ntBASIC14.05□□□□□ -0.16
Col2a1P28481 Gm18556-201ENSMUST00000219748 1031 ntBASIC14.05□□□□□ -0.16
Col2a1P28481 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col2a1P28481 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col2a1P28481 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col2a1P28481 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col2a1P28481 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col2a1P28481 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col2a1P28481 Gm38385-201ENSMUST00000194454 2351 ntBASIC14.04□□□□□ -0.16
Col2a1P28481 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col2a1P28481 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC14.04□□□□□ -0.16
Col2a1P28481 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col2a1P28481 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col2a1P28481 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col2a1P28481 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col2a1P28481 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col2a1P28481 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Col2a1P28481 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col2a1P28481 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col2a1P28481 Gm43267-201ENSMUST00000199664 1796 ntBASIC14.04□□□□□ -0.16
Col2a1P28481 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC14.04□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms