Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RaraP11416 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
RaraP11416 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RaraP11416 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RaraP11416 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RaraP11416 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC13.57□□□□□ -0.24
RaraP11416 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RaraP11416 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC13.57□□□□□ -0.24
RaraP11416 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
RaraP11416 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC13.57□□□□□ -0.24
RaraP11416 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC13.57□□□□□ -0.24
RaraP11416 H2-Pa-201ENSMUST00000182803 626 ntBASIC13.57□□□□□ -0.24
RaraP11416 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
RaraP11416 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC13.57□□□□□ -0.24
RaraP11416 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RaraP11416 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
RaraP11416 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RaraP11416 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
RaraP11416 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
RaraP11416 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RaraP11416 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
RaraP11416 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
RaraP11416 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RaraP11416 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
RaraP11416 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
RaraP11416 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RaraP11416 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RaraP11416 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
RaraP11416 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Gm43061-201ENSMUST00000198850 2241 ntBASIC13.56□□□□□ -0.24
RaraP11416 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
RaraP11416 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Gm43823-201ENSMUST00000197391 1808 ntBASIC13.56□□□□□ -0.24
RaraP11416 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC13.56□□□□□ -0.24
RaraP11416 Gm24644-201ENSMUST00000157114 139 ntBASIC13.56□□□□□ -0.24
RaraP11416 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
RaraP11416 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC13.56□□□□□ -0.24
RaraP11416 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC13.56□□□□□ -0.24
RaraP11416 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
RaraP11416 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
RaraP11416 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC13.56□□□□□ -0.24
RaraP11416 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
RaraP11416 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Gm13127-201ENSMUST00000118978 1389 ntBASIC13.56□□□□□ -0.24
RaraP11416 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC13.56□□□□□ -0.24
RaraP11416 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RaraP11416 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC13.55□□□□□ -0.24
RaraP11416 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Gm12384-201ENSMUST00000119228 919 ntBASIC13.55□□□□□ -0.24
RaraP11416 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC13.55□□□□□ -0.24
RaraP11416 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC13.55□□□□□ -0.24
RaraP11416 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC13.55□□□□□ -0.24
RaraP11416 Gm9002-201ENSMUST00000178437 499 ntBASIC13.55□□□□□ -0.24
RaraP11416 Gm7063-201ENSMUST00000186840 981 ntBASIC13.55□□□□□ -0.24
RaraP11416 Gm44882-201ENSMUST00000205702 802 ntBASIC13.55□□□□□ -0.24
RaraP11416 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC13.55□□□□□ -0.24
RaraP11416 Gm7561-201ENSMUST00000211203 886 ntBASIC13.55□□□□□ -0.24
RaraP11416 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
RaraP11416 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 46 ms