Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Gm44364-201ENSMUST00000198368 141 ntBASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 AC165260.3-202ENSMUST00000224550 1031 ntBASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Cts7-204ENSMUST00000225321 1257 ntBASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 AC122840.1-201ENSMUST00000220915 3334 ntBASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Gm3287-205ENSMUST00000228893 1332 ntBASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Gm7789-202ENSMUST00000211273 1400 ntBASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC12.91□□□□□ -0.34
Vps28Q9D1C8 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Gm2991-201ENSMUST00000173338 480 ntBASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Morn2-202ENSMUST00000227729 656 ntBASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Gm20633-201ENSMUST00000176742 2831 ntBASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Vps28Q9D1C8 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Gm7172-201ENSMUST00000218047 1152 ntBASIC12.9□□□□□ -0.34
Vps28Q9D1C8 AC154305.4-201ENSMUST00000224520 614 ntBASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
Vps28Q9D1C8 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Vps28Q9D1C8 Gm42863-201ENSMUST00000197875 2958 ntBASIC12.9□□□□□ -0.35
Vps28Q9D1C8 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.35
Vps28Q9D1C8 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Pck2-205ENSMUST00000226352 2784 ntBASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms