Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Gm8038-201ENSMUST00000164674 2044 ntBASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Gm8805-201ENSMUST00000117848 313 ntBASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Gm11618-201ENSMUST00000117946 267 ntBASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Gm16215-201ENSMUST00000161990 637 ntBASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Gm22121-201ENSMUST00000175148 54 ntBASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Gm44772-201ENSMUST00000207623 1191 ntBASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 AC238811.3-201ENSMUST00000225422 709 ntBASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Scaf4Q6PFF0 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 AC160410.1-201ENSMUST00000219298 1972 ntBASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Wdyhv1-203ENSMUST00000226889 394 ntBASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Scaf4Q6PFF0 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Gm13123-201ENSMUST00000122173 492 ntBASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Gm16296-201ENSMUST00000159905 325 ntBASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC12.37□□□□□ -0.43
Scaf4Q6PFF0 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC12.37□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 73.5 ms