Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Gm3287-205ENSMUST00000228893 1332 ntBASIC13.91□□□□□ -0.18
Col6a1Q04857 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Col6a1Q04857 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Col6a1Q04857 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Col6a1Q04857 Gm13045-201ENSMUST00000119019 712 ntBASIC13.91□□□□□ -0.18
Col6a1Q04857 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Gm9540-201ENSMUST00000188230 478 ntBASIC13.91□□□□□ -0.18
Col6a1Q04857 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC13.91□□□□□ -0.18
Col6a1Q04857 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC13.91□□□□□ -0.18
Col6a1Q04857 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC13.91□□□□□ -0.18
Col6a1Q04857 Aprt-ps-201ENSMUST00000212311 505 ntBASIC13.91□□□□□ -0.18
Col6a1Q04857 AC154849.4-201ENSMUST00000224868 365 ntBASIC13.91□□□□□ -0.18
Col6a1Q04857 AC135469.1-201ENSMUST00000225984 772 ntBASIC13.91□□□□□ -0.18
Col6a1Q04857 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Col6a1Q04857 Gm10312-201ENSMUST00000078515 489 ntBASIC13.91□□□□□ -0.18
Col6a1Q04857 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Col6a1Q04857 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
Col6a1Q04857 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Col6a1Q04857 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC13.91□□□□□ -0.18
Col6a1Q04857 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC13.91□□□□□ -0.18
Col6a1Q04857 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col6a1Q04857 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Col6a1Q04857 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC13.9□□□□□ -0.18
Col6a1Q04857 Gm37827-201ENSMUST00000194486 1542 ntBASIC13.9□□□□□ -0.18
Col6a1Q04857 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Col6a1Q04857 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Col6a1Q04857 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Col6a1Q04857 Gm13736-201ENSMUST00000119272 253 ntBASIC13.9□□□□□ -0.18
Col6a1Q04857 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC13.9□□□□□ -0.18
Col6a1Q04857 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC13.9□□□□□ -0.18
Col6a1Q04857 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC13.9□□□□□ -0.18
Col6a1Q04857 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC13.9□□□□□ -0.18
Col6a1Q04857 Gm38297-201ENSMUST00000195122 1057 ntBASIC13.9□□□□□ -0.18
Col6a1Q04857 Gm17812-201ENSMUST00000204935 318 ntBASIC13.9□□□□□ -0.18
Col6a1Q04857 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC13.9□□□□□ -0.18
Col6a1Q04857 Gm7600-201ENSMUST00000209657 785 ntBASIC13.9□□□□□ -0.18
Col6a1Q04857 AC166051.1-201ENSMUST00000214313 210 ntBASIC13.9□□□□□ -0.18
Col6a1Q04857 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC13.9□□□□□ -0.18
Col6a1Q04857 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC13.9□□□□□ -0.18
Col6a1Q04857 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Col6a1Q04857 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Col6a1Q04857 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Gm43134-201ENSMUST00000199434 1886 ntBASIC13.9□□□□□ -0.18
Col6a1Q04857 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC13.9□□□□□ -0.18
Col6a1Q04857 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
Col6a1Q04857 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col6a1Q04857 Ssr1-203ENSMUST00000225246 1825 ntBASIC13.9□□□□□ -0.18
Col6a1Q04857 Gm2673-201ENSMUST00000120958 1608 ntBASIC13.9□□□□□ -0.19
Col6a1Q04857 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.19
Col6a1Q04857 Gm5939-201ENSMUST00000119613 2874 ntBASIC13.89□□□□□ -0.19
Col6a1Q04857 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
Col6a1Q04857 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col6a1Q04857 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col6a1Q04857 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Col6a1Q04857 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col6a1Q04857 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col6a1Q04857 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col6a1Q04857 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Col6a1Q04857 Gm6963-201ENSMUST00000147879 379 ntBASIC13.89□□□□□ -0.19
Col6a1Q04857 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Col6a1Q04857 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC13.89□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 65 ms