Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox3P53784 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox3P53784 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox3P53784 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sox3P53784 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC12.1□□□□□ -0.47
Sox3P53784 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox3P53784 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox3P53784 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox3P53784 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sox3P53784 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC12.1□□□□□ -0.47
Sox3P53784 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC12.09□□□□□ -0.47
Sox3P53784 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
Sox3P53784 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC12.09□□□□□ -0.47
Sox3P53784 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Gm9083-201ENSMUST00000120423 819 ntBASIC12.09□□□□□ -0.47
Sox3P53784 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC12.09□□□□□ -0.47
Sox3P53784 Gm13570-201ENSMUST00000140763 309 ntBASIC12.09□□□□□ -0.47
Sox3P53784 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Mir1943-201ENSMUST00000158276 73 ntBASIC12.09□□□□□ -0.47
Sox3P53784 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC12.09□□□□□ -0.47
Sox3P53784 Gm38317-201ENSMUST00000195564 343 ntBASIC12.09□□□□□ -0.47
Sox3P53784 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Gm30285-201ENSMUST00000214614 422 ntBASIC12.09□□□□□ -0.47
Sox3P53784 Gm5781-201ENSMUST00000219792 443 ntBASIC12.09□□□□□ -0.47
Sox3P53784 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC12.09□□□□□ -0.47
Sox3P53784 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC12.09□□□□□ -0.47
Sox3P53784 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Sox3P53784 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Sox3P53784 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox3P53784 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Sox3P53784 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.47
Sox3P53784 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Sox3P53784 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Sox3P53784 Gm14130-201ENSMUST00000118417 987 ntBASIC12.08□□□□□ -0.48
Sox3P53784 Gm13813-201ENSMUST00000120998 787 ntBASIC12.08□□□□□ -0.48
Sox3P53784 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC12.08□□□□□ -0.48
Sox3P53784 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Gm3508-201ENSMUST00000186012 792 ntBASIC12.08□□□□□ -0.48
Sox3P53784 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC12.08□□□□□ -0.48
Sox3P53784 Gm44064-201ENSMUST00000204964 1087 ntBASIC12.08□□□□□ -0.48
Sox3P53784 Gm44967-201ENSMUST00000207047 631 ntBASIC12.08□□□□□ -0.48
Sox3P53784 AC134254.1-201ENSMUST00000221362 167 ntBASIC12.08□□□□□ -0.48
Sox3P53784 AC126253.1-202ENSMUST00000226732 835 ntBASIC12.08□□□□□ -0.48
Sox3P53784 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Gm10702-201ENSMUST00000098929 1268 ntBASIC12.08□□□□□ -0.48
Sox3P53784 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC12.08□□□□□ -0.48
Sox3P53784 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Sox3P53784 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sox3P53784 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 56.3 ms