Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Col1a1P11087 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC14.57□□□□□ -0.08
Col1a1P11087 Gm7722-201ENSMUST00000120646 741 ntBASIC14.57□□□□□ -0.08
Col1a1P11087 D8Ertd738e-201ENSMUST00000019506 616 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Col1a1P11087 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC14.57□□□□□ -0.08
Col1a1P11087 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Col1a1P11087 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Col1a1P11087 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC14.56□□□□□ -0.08
Col1a1P11087 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Col1a1P11087 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC14.56□□□□□ -0.08
Col1a1P11087 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC14.56□□□□□ -0.08
Col1a1P11087 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC14.56□□□□□ -0.08
Col1a1P11087 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 Gm28324-201ENSMUST00000187913 264 ntBASIC14.56□□□□□ -0.08
Col1a1P11087 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC14.56□□□□□ -0.08
Col1a1P11087 Gm18893-201ENSMUST00000198416 943 ntBASIC14.56□□□□□ -0.08
Col1a1P11087 Gm8956-201ENSMUST00000203939 825 ntBASIC14.56□□□□□ -0.08
Col1a1P11087 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC14.56□□□□□ -0.08
Col1a1P11087 AC134860.1-201ENSMUST00000224867 660 ntBASIC14.56□□□□□ -0.08
Col1a1P11087 Prrxl1-205ENSMUST00000228878 723 ntBASIC14.56□□□□□ -0.08
Col1a1P11087 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col1a1P11087 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col1a1P11087 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
Col1a1P11087 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col1a1P11087 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Col1a1P11087 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Col1a1P11087 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col1a1P11087 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col1a1P11087 Gm25880-201ENSMUST00000104331 132 ntBASIC14.55□□□□□ -0.08
Col1a1P11087 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Col1a1P11087 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col1a1P11087 Gm15352-201ENSMUST00000118696 270 ntBASIC14.55□□□□□ -0.08
Col1a1P11087 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col1a1P11087 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col1a1P11087 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC14.55□□□□□ -0.08
Col1a1P11087 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Col1a1P11087 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col1a1P11087 Gm3671-201ENSMUST00000182463 1007 ntBASIC14.55□□□□□ -0.08
Col1a1P11087 Mir6998-201ENSMUST00000183343 64 ntBASIC14.55□□□□□ -0.08
Col1a1P11087 Gm18711-201ENSMUST00000199341 750 ntBASIC14.55□□□□□ -0.08
Col1a1P11087 Gm44851-201ENSMUST00000205735 2309 ntBASIC14.55□□□□□ -0.08
Col1a1P11087 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col1a1P11087 Gm3028-201ENSMUST00000213805 1119 ntBASIC14.55□□□□□ -0.08
Col1a1P11087 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col1a1P11087 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Col1a1P11087 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col1a1P11087 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col1a1P11087 Gm5705-201ENSMUST00000066241 711 ntBASIC14.55□□□□□ -0.08
Col1a1P11087 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col1a1P11087 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col1a1P11087 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col1a1P11087 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Col1a1P11087 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Col1a1P11087 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Col1a1P11087 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC14.54□□□□□ -0.08
Col1a1P11087 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC14.54□□□□□ -0.08
Col1a1P11087 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC14.54□□□□□ -0.08
Col1a1P11087 Gm11663-201ENSMUST00000117888 290 ntBASIC14.54□□□□□ -0.08
Col1a1P11087 Gm11340-201ENSMUST00000119226 412 ntBASIC14.54□□□□□ -0.08
Col1a1P11087 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC14.54□□□□□ -0.08
Col1a1P11087 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC14.54□□□□□ -0.08
Col1a1P11087 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC14.54□□□□□ -0.08
Col1a1P11087 Gm6485-201ENSMUST00000160676 439 ntBASIC14.54□□□□□ -0.08
Col1a1P11087 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Gm23045-201ENSMUST00000175041 96 ntBASIC14.54□□□□□ -0.08
Col1a1P11087 Gm42518-201ENSMUST00000196277 938 ntBASIC14.54□□□□□ -0.08
Col1a1P11087 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC14.54□□□□□ -0.08
Col1a1P11087 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
Col1a1P11087 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms