Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Gm18711-201ENSMUST00000199341 750 ntBASIC15.16■□□□□ 0.02
Col4a1P02463 Gm44882-201ENSMUST00000205702 802 ntBASIC15.16■□□□□ 0.02
Col4a1P02463 Gm6867-201ENSMUST00000219165 425 ntBASIC15.16■□□□□ 0.02
Col4a1P02463 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Col4a1P02463 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 AC123834.1-201ENSMUST00000225346 2043 ntBASIC15.16■□□□□ 0.02
Col4a1P02463 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Col4a1P02463 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC15.16■□□□□ 0.02
Col4a1P02463 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Col4a1P02463 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Col4a1P02463 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Gm43807-201ENSMUST00000200678 1781 ntBASIC15.16■□□□□ 0.02
Col4a1P02463 Ssr1-203ENSMUST00000225246 1825 ntBASIC15.16■□□□□ 0.02
Col4a1P02463 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Gm16071-201ENSMUST00000119589 793 ntBASIC15.16■□□□□ 0.02
Col4a1P02463 Gm5778-201ENSMUST00000171003 1072 ntBASIC15.16■□□□□ 0.02
Col4a1P02463 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC15.16■□□□□ 0.02
Col4a1P02463 Gm17826-201ENSMUST00000189720 798 ntBASIC15.16■□□□□ 0.02
Col4a1P02463 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col4a1P02463 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC15.16■□□□□ 0.02
Col4a1P02463 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC15.16■□□□□ 0.02
Col4a1P02463 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC15.16■□□□□ 0.02
Col4a1P02463 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
Col4a1P02463 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Gm13910-201ENSMUST00000121752 1428 ntBASIC15.15■□□□□ 0.02
Col4a1P02463 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC15.15■□□□□ 0.02
Col4a1P02463 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Gm9129-201ENSMUST00000218173 1689 ntBASIC15.15■□□□□ 0.02
Col4a1P02463 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Col4a1P02463 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Col4a1P02463 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Col4a1P02463 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC15.15■□□□□ 0.02
Col4a1P02463 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Gm14665-201ENSMUST00000122294 557 ntBASIC15.15■□□□□ 0.02
Col4a1P02463 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC15.15■□□□□ 0.02
Col4a1P02463 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC15.15■□□□□ 0.02
Col4a1P02463 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Gm18974-201ENSMUST00000221478 1031 ntBASIC15.15■□□□□ 0.02
Col4a1P02463 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC15.15■□□□□ 0.02
Col4a1P02463 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Col4a1P02463 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Col4a1P02463 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col4a1P02463 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Col4a1P02463 AC116503.1-201ENSMUST00000215445 2192 ntBASIC15.14■□□□□ 0.01
Col4a1P02463 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col4a1P02463 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col4a1P02463 Gm15004-201ENSMUST00000119192 630 ntBASIC15.14■□□□□ 0.01
Col4a1P02463 Gm13328-201ENSMUST00000120816 1020 ntBASIC15.14■□□□□ 0.01
Col4a1P02463 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC15.14■□□□□ 0.01
Col4a1P02463 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col4a1P02463 Mir1956-201ENSMUST00000157748 65 ntBASIC15.14■□□□□ 0.01
Col4a1P02463 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Col4a1P02463 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Col4a1P02463 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col4a1P02463 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col4a1P02463 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col4a1P02463 Gm44711-201ENSMUST00000205414 1264 ntBASIC15.14■□□□□ 0.01
Col4a1P02463 Gm45398-201ENSMUST00000210561 165 ntBASIC15.14■□□□□ 0.01
Col4a1P02463 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col4a1P02463 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col4a1P02463 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col4a1P02463 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col4a1P02463 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col4a1P02463 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col4a1P02463 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col4a1P02463 Gm38058-201ENSMUST00000194323 4368 ntBASIC15.14■□□□□ 0.01
Col4a1P02463 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col4a1P02463 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col4a1P02463 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms