Protein–RNA interactions for Protein: B1AVK5

Col4a6, Collagen, type IV, alpha 6, mousemouse

Predictions only

Length 1,691 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a6B1AVK5 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col4a6B1AVK5 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col4a6B1AVK5 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col4a6B1AVK5 CT009489.1-201ENSMUST00000227740 1893 ntBASIC12.69□□□□□ -0.38
Col4a6B1AVK5 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
Col4a6B1AVK5 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Gm15207-201ENSMUST00000119259 442 ntBASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Gm5706-201ENSMUST00000181525 993 ntBASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 CT485606.1-201ENSMUST00000213187 878 ntBASIC12.68□□□□□ -0.38
Col4a6B1AVK5 AC166341.2-201ENSMUST00000220571 120 ntBASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Gm6430-201ENSMUST00000054664 1248 ntBASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 AC154262.2-202ENSMUST00000225158 1331 ntBASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col4a6B1AVK5 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Gm37513-201ENSMUST00000194830 2268 ntBASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Gm38378-201ENSMUST00000195153 2268 ntBASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Gm3551-201ENSMUST00000190750 664 ntBASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Ighv10-1-201ENSMUST00000103492 359 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Gm15744-201ENSMUST00000161734 213 ntBASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Gm4654-201ENSMUST00000183305 982 ntBASIC12.67□□□□□ -0.38
Col4a6B1AVK5 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col4a6B1AVK5 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
Col4a6B1AVK5 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.66□□□□□ -0.38
Col4a6B1AVK5 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col4a6B1AVK5 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
Col4a6B1AVK5 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col4a6B1AVK5 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col4a6B1AVK5 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col4a6B1AVK5 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col4a6B1AVK5 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC12.66□□□□□ -0.38
Col4a6B1AVK5 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col4a6B1AVK5 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col4a6B1AVK5 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col4a6B1AVK5 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms