Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lima1Q9ERG0 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lima1Q9ERG0 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lima1Q9ERG0 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lima1Q9ERG0 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC12.45□□□□□ -0.42
Lima1Q9ERG0 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Lima1Q9ERG0 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lima1Q9ERG0 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC12.45□□□□□ -0.42
Lima1Q9ERG0 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lima1Q9ERG0 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lima1Q9ERG0 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lima1Q9ERG0 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Abhd6-203ENSMUST00000225234 1958 ntBASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Gm12928-201ENSMUST00000117115 573 ntBASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Gm5303-201ENSMUST00000117943 1252 ntBASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Gm12091-201ENSMUST00000146791 830 ntBASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Gm8515-201ENSMUST00000194852 576 ntBASIC12.44□□□□□ -0.42
Lima1Q9ERG0 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Gm44985-201ENSMUST00000206202 1016 ntBASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Gm18473-201ENSMUST00000220543 868 ntBASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 AC154239.3-201ENSMUST00000226933 674 ntBASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Lima1Q9ERG0 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Gm18630-201ENSMUST00000222109 1397 ntBASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Gm9115-201ENSMUST00000120192 1348 ntBASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Gm23984-201ENSMUST00000157139 203 ntBASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lima1Q9ERG0 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Lima1Q9ERG0 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lima1Q9ERG0 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lima1Q9ERG0 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lima1Q9ERG0 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC12.42□□□□□ -0.42
Lima1Q9ERG0 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lima1Q9ERG0 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lima1Q9ERG0 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lima1Q9ERG0 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms