Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Gm2383-201ENSMUST00000181461 807 ntBASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Gm43068-201ENSMUST00000201095 1273 ntBASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Gm4768-201ENSMUST00000206199 686 ntBASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Ushbp1Q8R370 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Gm3756-201ENSMUST00000169182 1355 ntBASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Gm13297-201ENSMUST00000120205 934 ntBASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Gm12997-201ENSMUST00000120207 640 ntBASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 AC169036.1-201ENSMUST00000227994 296 ntBASIC14.14□□□□□ -0.15
Ushbp1Q8R370 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Adra1a-206ENSMUST00000225182 2337 ntBASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Gm20633-201ENSMUST00000176742 2831 ntBASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ushbp1Q8R370 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Gm27196-201ENSMUST00000184787 2582 ntBASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Gm6652-201ENSMUST00000186414 1070 ntBASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Gm19163-201ENSMUST00000223313 780 ntBASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 n-R5s195-201ENSMUST00000082891 119 ntBASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Gm26035-201ENSMUST00000083065 308 ntBASIC14.13□□□□□ -0.15
Ushbp1Q8R370 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ushbp1Q8R370 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Gm44775-201ENSMUST00000207266 1456 ntBASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 86.4 ms