Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC10.91□□□□□ -0.66
Nkx3-1P97436 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Gm28450-201ENSMUST00000187349 638 ntBASIC10.91□□□□□ -0.66
Nkx3-1P97436 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Acot6-202ENSMUST00000222921 3622 ntBASIC10.91□□□□□ -0.66
Nkx3-1P97436 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Gm37795-201ENSMUST00000194216 2459 ntBASIC10.91□□□□□ -0.66
Nkx3-1P97436 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 AC122314.1-201ENSMUST00000223056 2239 ntBASIC10.9□□□□□ -0.66
Nkx3-1P97436 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Gm45495-201ENSMUST00000200940 1700 ntBASIC10.9□□□□□ -0.66
Nkx3-1P97436 Gm15459-201ENSMUST00000117405 1941 ntBASIC10.9□□□□□ -0.66
Nkx3-1P97436 Gm8355-201ENSMUST00000177767 1941 ntBASIC10.9□□□□□ -0.66
Nkx3-1P97436 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Gm14999-201ENSMUST00000121039 624 ntBASIC10.9□□□□□ -0.66
Nkx3-1P97436 Gm12566-201ENSMUST00000121479 359 ntBASIC10.9□□□□□ -0.66
Nkx3-1P97436 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC10.9□□□□□ -0.66
Nkx3-1P97436 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 AC165260.3-202ENSMUST00000224550 1031 ntBASIC10.9□□□□□ -0.66
Nkx3-1P97436 Gzmn-202ENSMUST00000225535 989 ntBASIC10.9□□□□□ -0.66
Nkx3-1P97436 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Nkx3-1P97436 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.67
Nkx3-1P97436 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.67
Nkx3-1P97436 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Nkx3-1P97436 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.67
Nkx3-1P97436 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Nkx3-1P97436 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Nkx3-1P97436 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Nkx3-1P97436 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Nkx3-1P97436 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC10.89□□□□□ -0.67
Nkx3-1P97436 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Nkx3-1P97436 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Nkx3-1P97436 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC10.89□□□□□ -0.67
Nkx3-1P97436 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC10.89□□□□□ -0.67
Nkx3-1P97436 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Nkx3-1P97436 Gm43823-201ENSMUST00000197391 1808 ntBASIC10.89□□□□□ -0.67
Nkx3-1P97436 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Nkx3-1P97436 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Nkx3-1P97436 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Nkx3-1P97436 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Nkx3-1P97436 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Nkx3-1P97436 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Nkx3-1P97436 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms