Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Col1a1P11087 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
Col1a1P11087 AC158355.1-201ENSMUST00000215895 1705 ntBASIC14.6□□□□□ -0.07
Col1a1P11087 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Col1a1P11087 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Col1a1P11087 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
Col1a1P11087 Grk6-205ENSMUST00000224653 2976 ntBASIC14.6□□□□□ -0.07
Col1a1P11087 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
Col1a1P11087 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col1a1P11087 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col1a1P11087 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC14.59□□□□□ -0.07
Col1a1P11087 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col1a1P11087 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC14.59□□□□□ -0.07
Col1a1P11087 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC14.59□□□□□ -0.07
Col1a1P11087 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC14.59□□□□□ -0.07
Col1a1P11087 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Col1a1P11087 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col1a1P11087 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col1a1P11087 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Col1a1P11087 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col1a1P11087 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col1a1P11087 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col1a1P11087 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col1a1P11087 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col1a1P11087 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col1a1P11087 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col1a1P11087 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col1a1P11087 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Col1a1P11087 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col1a1P11087 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC14.59□□□□□ -0.07
Col1a1P11087 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col1a1P11087 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col1a1P11087 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.07
Col1a1P11087 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Col1a1P11087 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Col1a1P11087 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Col1a1P11087 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
Col1a1P11087 Gm12899-201ENSMUST00000120565 551 ntBASIC14.58□□□□□ -0.08
Col1a1P11087 Gm4726-201ENSMUST00000135604 736 ntBASIC14.58□□□□□ -0.08
Col1a1P11087 Gm6019-201ENSMUST00000148369 736 ntBASIC14.58□□□□□ -0.08
Col1a1P11087 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col1a1P11087 Gm25072-201ENSMUST00000175233 235 ntBASIC14.58□□□□□ -0.08
Col1a1P11087 Gm23771-201ENSMUST00000178702 110 ntBASIC14.58□□□□□ -0.08
Col1a1P11087 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col1a1P11087 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC14.58□□□□□ -0.08
Col1a1P11087 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC14.58□□□□□ -0.08
Col1a1P11087 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col1a1P11087 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC14.58□□□□□ -0.08
Col1a1P11087 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Col1a1P11087 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col1a1P11087 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col1a1P11087 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col1a1P11087 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col1a1P11087 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
Col1a1P11087 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
Col1a1P11087 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col1a1P11087 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col1a1P11087 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col1a1P11087 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col1a1P11087 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Col1a1P11087 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col1a1P11087 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Col1a1P11087 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col1a1P11087 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col1a1P11087 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col1a1P11087 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC14.57□□□□□ -0.08
Col1a1P11087 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Gm14585-201ENSMUST00000120713 634 ntBASIC14.57□□□□□ -0.08
Col1a1P11087 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC14.57□□□□□ -0.08
Col1a1P11087 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC14.57□□□□□ -0.08
Col1a1P11087 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC14.57□□□□□ -0.08
Col1a1P11087 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Col1a1P11087 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
Col1a1P11087 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Col1a1P11087 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
Col1a1P11087 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col1a1P11087 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 61.9 ms