Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Gm43579-201ENSMUST00000202387 1307 ntBASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Gm43858-201ENSMUST00000199418 1778 ntBASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Snord83b-201ENSMUST00000104546 94 ntBASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Gm23363-201ENSMUST00000175024 79 ntBASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Mir7070-201ENSMUST00000183657 86 ntBASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Gm5896-201ENSMUST00000189662 1024 ntBASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Gm37489-201ENSMUST00000191883 159 ntBASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Gm38158-201ENSMUST00000194617 339 ntBASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Gm6082-201ENSMUST00000215204 454 ntBASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Gm44942-201ENSMUST00000096093 2072 ntBASIC14.17□□□□□ -0.14
Ushbp1Q8R370 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Gm38157-201ENSMUST00000194178 1698 ntBASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ushbp1Q8R370 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Gm44207-201ENSMUST00000204568 1424 ntBASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ushbp1Q8R370 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ushbp1Q8R370 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms