Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Gm29590-201ENSMUST00000190396 1304 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Gm14363-201ENSMUST00000122304 409 ntBASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Gm25043-201ENSMUST00000158604 212 ntBASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Gm9257-201ENSMUST00000221254 232 ntBASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim47Q8C0E3 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
Trim47Q8C0E3 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC14□□□□□ -0.17
Trim47Q8C0E3 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC14□□□□□ -0.17
Trim47Q8C0E3 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC14□□□□□ -0.17
Trim47Q8C0E3 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC14□□□□□ -0.17
Trim47Q8C0E3 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Trim47Q8C0E3 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Gm23270-201ENSMUST00000104055 131 ntBASIC14□□□□□ -0.17
Trim47Q8C0E3 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
Trim47Q8C0E3 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
Trim47Q8C0E3 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Trim47Q8C0E3 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC14□□□□□ -0.17
Trim47Q8C0E3 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC14□□□□□ -0.17
Trim47Q8C0E3 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC14□□□□□ -0.17
Trim47Q8C0E3 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC14□□□□□ -0.17
Trim47Q8C0E3 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Trim47Q8C0E3 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim47Q8C0E3 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Trim47Q8C0E3 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Gm12849-201ENSMUST00000120013 739 ntBASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Gm17376-201ENSMUST00000166016 84 ntBASIC13.99□□□□□ -0.17
Trim47Q8C0E3 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Gm38241-201ENSMUST00000192641 898 ntBASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Ighv1-62-201ENSMUST00000193406 350 ntBASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Gm2673-201ENSMUST00000120958 1608 ntBASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms