Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC12.37□□□□□ -0.43
Chd3B1AR17 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC12.37□□□□□ -0.43
Chd3B1AR17 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
Chd3B1AR17 Gm25700-201ENSMUST00000177693 110 ntBASIC12.37□□□□□ -0.43
Chd3B1AR17 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC12.37□□□□□ -0.43
Chd3B1AR17 Gm9022-201ENSMUST00000182482 992 ntBASIC12.37□□□□□ -0.43
Chd3B1AR17 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Rprl1-202ENSMUST00000198476 238 ntBASIC12.37□□□□□ -0.43
Chd3B1AR17 Gm5869-201ENSMUST00000200248 1257 ntBASIC12.37□□□□□ -0.43
Chd3B1AR17 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Chd3B1AR17 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC12.37□□□□□ -0.43
Chd3B1AR17 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC12.37□□□□□ -0.43
Chd3B1AR17 AC093022.5-201ENSMUST00000226841 1079 ntBASIC12.37□□□□□ -0.43
Chd3B1AR17 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Chd3B1AR17 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC12.37□□□□□ -0.43
Chd3B1AR17 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Chd3B1AR17 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC12.37□□□□□ -0.43
Chd3B1AR17 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Gm37861-201ENSMUST00000193534 2869 ntBASIC12.37□□□□□ -0.43
Chd3B1AR17 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Chd3B1AR17 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Chd3B1AR17 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Gm26616-202ENSMUST00000195676 3107 ntBASIC12.36□□□□□ -0.43
Chd3B1AR17 Gm6210-201ENSMUST00000204734 1942 ntBASIC12.36□□□□□ -0.43
Chd3B1AR17 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC12.36□□□□□ -0.43
Chd3B1AR17 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC12.36□□□□□ -0.43
Chd3B1AR17 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC12.36□□□□□ -0.43
Chd3B1AR17 Gm5363-201ENSMUST00000211927 938 ntBASIC12.36□□□□□ -0.43
Chd3B1AR17 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC12.36□□□□□ -0.43
Chd3B1AR17 Gm10076-201ENSMUST00000073238 384 ntBASIC12.36□□□□□ -0.43
Chd3B1AR17 Gm42840-201ENSMUST00000200303 2251 ntBASIC12.36□□□□□ -0.43
Chd3B1AR17 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Chd3B1AR17 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Chd3B1AR17 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Chd3B1AR17 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC12.36□□□□□ -0.43
Chd3B1AR17 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Chd3B1AR17 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 AA914427-201ENSMUST00000193194 1166 ntBASIC12.36□□□□□ -0.43
Chd3B1AR17 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Chd3B1AR17 Mettl6-204ENSMUST00000227595 1027 ntBASIC12.36□□□□□ -0.43
Chd3B1AR17 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Chd3B1AR17 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Chd3B1AR17 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Chd3B1AR17 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Chd3B1AR17 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Chd3B1AR17 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Chd3B1AR17 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Chd3B1AR17 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC12.35□□□□□ -0.43
Chd3B1AR17 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Chd3B1AR17 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Chd3B1AR17 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Chd3B1AR17 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Chd3B1AR17 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Chd3B1AR17 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Chd3B1AR17 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Chd3B1AR17 Gm14208-201ENSMUST00000119645 678 ntBASIC12.35□□□□□ -0.43
Chd3B1AR17 Gm12997-201ENSMUST00000120207 640 ntBASIC12.35□□□□□ -0.43
Chd3B1AR17 Gm14832-201ENSMUST00000121289 322 ntBASIC12.35□□□□□ -0.43
Chd3B1AR17 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Chd3B1AR17 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC12.35□□□□□ -0.43
Chd3B1AR17 Gm24845-201ENSMUST00000158034 109 ntBASIC12.35□□□□□ -0.43
Chd3B1AR17 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC12.35□□□□□ -0.43
Chd3B1AR17 Gm25732-201ENSMUST00000175168 60 ntBASIC12.35□□□□□ -0.43
Chd3B1AR17 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 61.9 ms