Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Gm45643-201ENSMUST00000211364 1484 ntBASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Trim3Q9R1R2 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 AC126253.1-201ENSMUST00000227974 824 ntBASIC11.93□□□□□ -0.5
Trim3Q9R1R2 AC140451.2-201ENSMUST00000228030 664 ntBASIC11.93□□□□□ -0.5
Trim3Q9R1R2 AC154276.1-201ENSMUST00000228874 1299 ntBASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 AC241621.2-201ENSMUST00000223991 2151 ntBASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim3Q9R1R2 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Gm11978-201ENSMUST00000122315 466 ntBASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Gm2639-201ENSMUST00000156881 1297 ntBASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Gm43438-201ENSMUST00000198133 379 ntBASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms