Protein–RNA interactions for Protein: Q9CY97

Ssu72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, mousemouse

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ssu72Q9CY97 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Gm24231-201ENSMUST00000104315 133 ntBASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Gm12341-201ENSMUST00000119724 503 ntBASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Gm16296-201ENSMUST00000159905 325 ntBASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Gm22121-201ENSMUST00000175148 54 ntBASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Gm6652-201ENSMUST00000186414 1070 ntBASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 AC160405.1-201ENSMUST00000218207 1545 ntBASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ssu72Q9CY97 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Mir7654-201ENSMUST00000185082 70 ntBASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Gm43575-201ENSMUST00000196420 516 ntBASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Gm42612-201ENSMUST00000197986 623 ntBASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Gm43170-201ENSMUST00000199827 612 ntBASIC12.54□□□□□ -0.4
Ssu72Q9CY97 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ssu72Q9CY97 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Gm37849-201ENSMUST00000194722 1881 ntBASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Cdk7-205ENSMUST00000225990 1159 ntBASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Gm8038-201ENSMUST00000164674 2044 ntBASIC12.53□□□□□ -0.4
Ssu72Q9CY97 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Syt7-204ENSMUST00000223586 1344 ntBASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ssu72Q9CY97 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Ssu72Q9CY97 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Ssu72Q9CY97 Gm37542-201ENSMUST00000192563 2832 ntBASIC12.52□□□□□ -0.4
Ssu72Q9CY97 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Ssu72Q9CY97 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Ssu72Q9CY97 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC12.52□□□□□ -0.4
Ssu72Q9CY97 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Ssu72Q9CY97 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 81.3 ms