Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Gm6210-201ENSMUST00000204734 1942 ntBASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Gm12329-201ENSMUST00000120829 1007 ntBASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Gm17420-201ENSMUST00000164753 153 ntBASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Gm5904-201ENSMUST00000210286 865 ntBASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Gm45880-201ENSMUST00000213041 853 ntBASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Gm19309-201ENSMUST00000218295 205 ntBASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Upf3bQ3ULL6 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 AC132317.1-201ENSMUST00000227227 962 ntBASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 AC167013.1-201ENSMUST00000228592 202 ntBASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 AC117194.1-201ENSMUST00000224847 3002 ntBASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Upf3bQ3ULL6 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 AC125108.1-201ENSMUST00000218986 2330 ntBASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Upf3bQ3ULL6 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 70.8 ms