Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
Nkx3-1P97436 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC10.97□□□□□ -0.65
Nkx3-1P97436 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Nkx3-1P97436 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Gm9924-202ENSMUST00000192760 2311 ntBASIC10.97□□□□□ -0.65
Nkx3-1P97436 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Gm44065-201ENSMUST00000203184 3527 ntBASIC10.96□□□□□ -0.65
Nkx3-1P97436 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Gm5989-201ENSMUST00000096092 2077 ntBASIC10.96□□□□□ -0.65
Nkx3-1P97436 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC10.96□□□□□ -0.65
Nkx3-1P97436 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Gm4864-201ENSMUST00000219894 1461 ntBASIC10.96□□□□□ -0.65
Nkx3-1P97436 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC10.96□□□□□ -0.65
Nkx3-1P97436 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Mir5120-201ENSMUST00000175020 78 ntBASIC10.96□□□□□ -0.65
Nkx3-1P97436 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Gm25700-201ENSMUST00000177693 110 ntBASIC10.96□□□□□ -0.65
Nkx3-1P97436 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
Nkx3-1P97436 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Mir6979-201ENSMUST00000183927 56 ntBASIC10.96□□□□□ -0.65
Nkx3-1P97436 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Gm44262-201ENSMUST00000204969 372 ntBASIC10.96□□□□□ -0.65
Nkx3-1P97436 AC123665.1-201ENSMUST00000228204 438 ntBASIC10.96□□□□□ -0.65
Nkx3-1P97436 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Nkx3-1P97436 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC10.96□□□□□ -0.66
Nkx3-1P97436 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Nkx3-1P97436 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
Nkx3-1P97436 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Nkx3-1P97436 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Nkx3-1P97436 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC10.96□□□□□ -0.66
Nkx3-1P97436 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Nkx3-1P97436 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Nkx3-1P97436 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Nkx3-1P97436 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Nkx3-1P97436 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
Nkx3-1P97436 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC10.96□□□□□ -0.66
Nkx3-1P97436 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Nkx3-1P97436 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 AC126444.1-201ENSMUST00000225938 1768 ntBASIC10.95□□□□□ -0.66
Nkx3-1P97436 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Nkx3-1P97436 Gm2673-201ENSMUST00000120958 1608 ntBASIC10.95□□□□□ -0.66
Nkx3-1P97436 Gm9025-201ENSMUST00000122415 1575 ntBASIC10.95□□□□□ -0.66
Nkx3-1P97436 AC113060.1-201ENSMUST00000225689 1573 ntBASIC10.95□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 211.6 ms