Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col4a1P02463 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC15.27■□□□□ 0.04
Col4a1P02463 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col4a1P02463 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col4a1P02463 Gm2420-201ENSMUST00000119864 2149 ntBASIC15.27■□□□□ 0.04
Col4a1P02463 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col4a1P02463 Gm37691-201ENSMUST00000192147 2573 ntBASIC15.27■□□□□ 0.04
Col4a1P02463 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC15.27■□□□□ 0.04
Col4a1P02463 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col4a1P02463 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Col4a1P02463 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col4a1P02463 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col4a1P02463 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Col4a1P02463 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
Col4a1P02463 Gm12857-201ENSMUST00000117678 592 ntBASIC15.27■□□□□ 0.03
Col4a1P02463 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC15.27■□□□□ 0.03
Col4a1P02463 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col4a1P02463 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Col4a1P02463 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col4a1P02463 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC15.27■□□□□ 0.03
Col4a1P02463 AC132901.1-201ENSMUST00000224345 508 ntBASIC15.27■□□□□ 0.03
Col4a1P02463 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col4a1P02463 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col4a1P02463 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col4a1P02463 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col4a1P02463 Gm26448-201ENSMUST00000082446 203 ntBASIC15.27■□□□□ 0.03
Col4a1P02463 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col4a1P02463 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col4a1P02463 CT030684.3-201ENSMUST00000227308 2445 ntBASIC15.27■□□□□ 0.03
Col4a1P02463 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col4a1P02463 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC15.27■□□□□ 0.03
Col4a1P02463 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col4a1P02463 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col4a1P02463 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col4a1P02463 Gm43267-201ENSMUST00000199664 1796 ntBASIC15.27■□□□□ 0.03
Col4a1P02463 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col4a1P02463 Gm10152-201ENSMUST00000193475 1344 ntBASIC15.26■□□□□ 0.03
Col4a1P02463 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Col4a1P02463 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC15.26■□□□□ 0.03
Col4a1P02463 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Col4a1P02463 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Gm13809-201ENSMUST00000117921 597 ntBASIC15.26■□□□□ 0.03
Col4a1P02463 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC15.26■□□□□ 0.03
Col4a1P02463 Mir7677-201ENSMUST00000184226 67 ntBASIC15.26■□□□□ 0.03
Col4a1P02463 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Col4a1P02463 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Col4a1P02463 AC126257.1-201ENSMUST00000213195 1536 ntBASIC15.26■□□□□ 0.03
Col4a1P02463 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Gm45643-201ENSMUST00000211364 1484 ntBASIC15.26■□□□□ 0.03
Col4a1P02463 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC15.26■□□□□ 0.03
Col4a1P02463 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col4a1P02463 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC15.26■□□□□ 0.03
Col4a1P02463 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC15.25■□□□□ 0.03
Col4a1P02463 Gm17931-201ENSMUST00000208132 634 ntBASIC15.25■□□□□ 0.03
Col4a1P02463 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 AC122876.1-201ENSMUST00000217619 825 ntBASIC15.25■□□□□ 0.03
Col4a1P02463 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC15.25■□□□□ 0.03
Col4a1P02463 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Col4a1P02463 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 AC169511.2-201ENSMUST00000226674 2063 ntBASIC15.25■□□□□ 0.03
Col4a1P02463 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col4a1P02463 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
Col4a1P02463 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC15.25■□□□□ 0.03
Col4a1P02463 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Col4a1P02463 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Col4a1P02463 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC15.25■□□□□ 0.03
Col4a1P02463 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col4a1P02463 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 48.4 ms