Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim55G3X8Y1 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim55G3X8Y1 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim55G3X8Y1 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim55G3X8Y1 Khnyn-201ENSMUST00000022831 3898 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim55G3X8Y1 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim55G3X8Y1 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC13□□□□□ -0.33
Trim55G3X8Y1 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Slc6a18-201ENSMUST00000022105 2839 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Supt16-201ENSMUST00000046709 4673 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 BC001981-202ENSMUST00000191393 1545 ntBASIC13□□□□□ -0.33
Trim55G3X8Y1 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC13□□□□□ -0.33
Trim55G3X8Y1 Gm11025-201ENSMUST00000140773 466 ntBASIC13□□□□□ -0.33
Trim55G3X8Y1 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC13□□□□□ -0.33
Trim55G3X8Y1 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Gm37714-201ENSMUST00000194742 342 ntBASIC13□□□□□ -0.33
Trim55G3X8Y1 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC13□□□□□ -0.33
Trim55G3X8Y1 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
Trim55G3X8Y1 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Ccdc57-201ENSMUST00000056781 3403 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Cacna1s-204ENSMUST00000160641 6104 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Trim55G3X8Y1 Ehmt1-203ENSMUST00000102938 4680 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Trim55G3X8Y1 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Dnmt3a-218ENSMUST00000174817 8737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Pcdha6-201ENSMUST00000193389 4653 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 AC154517.2-201ENSMUST00000220829 2458 ntBASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Pcdhga10-201ENSMUST00000193404 4732 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Gm15920-201ENSMUST00000118998 402 ntBASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Mir7036b-201ENSMUST00000184791 63 ntBASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Gm44492-201ENSMUST00000197012 141 ntBASIC12.99□□□□□ -0.33
Trim55G3X8Y1 AC166997.1-201ENSMUST00000225122 572 ntBASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Ror2-202ENSMUST00000130235 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Zbtb21-202ENSMUST00000063605 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Invs-201ENSMUST00000030029 5633 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Slc6a5-201ENSMUST00000056442 7065 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Trp53inp2-201ENSMUST00000043237 3979 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Nod1-201ENSMUST00000060655 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Srgap3-202ENSMUST00000088373 8887 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim55G3X8Y1 Rpgrip1-202ENSMUST00000111603 5380 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim55G3X8Y1 Fam26e-201ENSMUST00000069125 5323 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim55G3X8Y1 Il6st-201ENSMUST00000070731 5207 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
Trim55G3X8Y1 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
Trim55G3X8Y1 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim55G3X8Y1 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim55G3X8Y1 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms