Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Lima1Q9ERG0 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Lima1Q9ERG0 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lima1Q9ERG0 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lima1Q9ERG0 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Lima1Q9ERG0 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lima1Q9ERG0 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Lima1Q9ERG0 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lima1Q9ERG0 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lima1Q9ERG0 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lima1Q9ERG0 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lima1Q9ERG0 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC20.67■□□□□ 0.9
Lima1Q9ERG0 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lima1Q9ERG0 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lima1Q9ERG0 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lima1Q9ERG0 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lima1Q9ERG0 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lima1Q9ERG0 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lima1Q9ERG0 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lima1Q9ERG0 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lima1Q9ERG0 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lima1Q9ERG0 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lima1Q9ERG0 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Lima1Q9ERG0 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lima1Q9ERG0 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.66■□□□□ 0.9
Lima1Q9ERG0 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Lima1Q9ERG0 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Lima1Q9ERG0 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Lima1Q9ERG0 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Lima1Q9ERG0 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lima1Q9ERG0 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Lima1Q9ERG0 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC20.65■□□□□ 0.9
Lima1Q9ERG0 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lima1Q9ERG0 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lima1Q9ERG0 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lima1Q9ERG0 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Lima1Q9ERG0 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Lima1Q9ERG0 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lima1Q9ERG0 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lima1Q9ERG0 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Lima1Q9ERG0 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lima1Q9ERG0 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lima1Q9ERG0 Mir6538-201ENSMUST00000183713 110 ntBASIC20.63■□□□□ 0.89
Lima1Q9ERG0 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.63■□□□□ 0.89
Lima1Q9ERG0 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lima1Q9ERG0 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lima1Q9ERG0 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lima1Q9ERG0 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lima1Q9ERG0 Gm27502-201ENSMUST00000183495 199 ntBASIC20.62■□□□□ 0.89
Lima1Q9ERG0 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.62■□□□□ 0.89
Lima1Q9ERG0 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lima1Q9ERG0 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Lima1Q9ERG0 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lima1Q9ERG0 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lima1Q9ERG0 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lima1Q9ERG0 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Lima1Q9ERG0 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Lima1Q9ERG0 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Lima1Q9ERG0 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Lima1Q9ERG0 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Lima1Q9ERG0 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Lima1Q9ERG0 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lima1Q9ERG0 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Lima1Q9ERG0 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Lima1Q9ERG0 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.6■□□□□ 0.89
Lima1Q9ERG0 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lima1Q9ERG0 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lima1Q9ERG0 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lima1Q9ERG0 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lima1Q9ERG0 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lima1Q9ERG0 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Lima1Q9ERG0 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Lima1Q9ERG0 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Lima1Q9ERG0 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Lima1Q9ERG0 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Lima1Q9ERG0 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Lima1Q9ERG0 Gm14523-201ENSMUST00000117260 558 ntBASIC20.59■□□□□ 0.89
Lima1Q9ERG0 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Lima1Q9ERG0 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.59■□□□□ 0.89
Lima1Q9ERG0 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Lima1Q9ERG0 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Lima1Q9ERG0 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.58■□□□□ 0.89
Lima1Q9ERG0 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Lima1Q9ERG0 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Lima1Q9ERG0 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Lima1Q9ERG0 Gm43403-201ENSMUST00000198011 1786 ntBASIC20.58■□□□□ 0.89
Lima1Q9ERG0 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Lima1Q9ERG0 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Lima1Q9ERG0 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Lima1Q9ERG0 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Lima1Q9ERG0 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.57■□□□□ 0.88
Lima1Q9ERG0 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Lima1Q9ERG0 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Lima1Q9ERG0 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Lima1Q9ERG0 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Lima1Q9ERG0 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20.56■□□□□ 0.88
Lima1Q9ERG0 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Lima1Q9ERG0 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Lima1Q9ERG0 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Lima1Q9ERG0 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms