Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Msh4Q99MT2 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Msh4Q99MT2 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Msh4Q99MT2 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Msh4Q99MT2 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Msh4Q99MT2 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Msh4Q99MT2 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
Msh4Q99MT2 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Msh4Q99MT2 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC20.4■□□□□ 0.86
Msh4Q99MT2 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Msh4Q99MT2 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Msh4Q99MT2 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Msh4Q99MT2 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Msh4Q99MT2 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Msh4Q99MT2 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Msh4Q99MT2 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Msh4Q99MT2 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Msh4Q99MT2 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
Msh4Q99MT2 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.39■□□□□ 0.85
Msh4Q99MT2 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC20.38■□□□□ 0.85
Msh4Q99MT2 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Msh4Q99MT2 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Msh4Q99MT2 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Msh4Q99MT2 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Msh4Q99MT2 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Msh4Q99MT2 Gm15820-201ENSMUST00000201566 728 ntBASIC20.37■□□□□ 0.85
Msh4Q99MT2 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC20.37■□□□□ 0.85
Msh4Q99MT2 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Msh4Q99MT2 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Msh4Q99MT2 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Msh4Q99MT2 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Msh4Q99MT2 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Msh4Q99MT2 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Msh4Q99MT2 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Msh4Q99MT2 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Msh4Q99MT2 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
Msh4Q99MT2 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Msh4Q99MT2 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Msh4Q99MT2 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Msh4Q99MT2 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Msh4Q99MT2 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Msh4Q99MT2 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Msh4Q99MT2 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Msh4Q99MT2 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Msh4Q99MT2 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.35■□□□□ 0.85
Msh4Q99MT2 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Msh4Q99MT2 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
Msh4Q99MT2 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Msh4Q99MT2 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Msh4Q99MT2 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
Msh4Q99MT2 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Msh4Q99MT2 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC20.35■□□□□ 0.85
Msh4Q99MT2 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Msh4Q99MT2 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Msh4Q99MT2 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Msh4Q99MT2 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Msh4Q99MT2 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Msh4Q99MT2 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Msh4Q99MT2 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Msh4Q99MT2 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Msh4Q99MT2 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Msh4Q99MT2 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Msh4Q99MT2 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Msh4Q99MT2 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Msh4Q99MT2 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Msh4Q99MT2 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Msh4Q99MT2 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC20.33■□□□□ 0.85
Msh4Q99MT2 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Msh4Q99MT2 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Msh4Q99MT2 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
Msh4Q99MT2 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.32■□□□□ 0.84
Msh4Q99MT2 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Msh4Q99MT2 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Msh4Q99MT2 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Msh4Q99MT2 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC20.31■□□□□ 0.84
Msh4Q99MT2 Nsd1-206ENSMUST00000224918 1001 ntBASIC20.31■□□□□ 0.84
Msh4Q99MT2 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Msh4Q99MT2 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Msh4Q99MT2 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Msh4Q99MT2 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Msh4Q99MT2 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Msh4Q99MT2 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Msh4Q99MT2 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Msh4Q99MT2 Gm37415-201ENSMUST00000192265 2054 ntBASIC20.3■□□□□ 0.84
Msh4Q99MT2 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Msh4Q99MT2 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Msh4Q99MT2 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Msh4Q99MT2 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.3■□□□□ 0.84
Msh4Q99MT2 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Msh4Q99MT2 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Msh4Q99MT2 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Msh4Q99MT2 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Msh4Q99MT2 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Msh4Q99MT2 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.29■□□□□ 0.84
Msh4Q99MT2 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Msh4Q99MT2 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Msh4Q99MT2 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.28■□□□□ 0.84
Msh4Q99MT2 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Msh4Q99MT2 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
Msh4Q99MT2 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms