Protein–RNA interactions for Protein: Q91Y21

Pcdha1, Protocadherin alpha 1, mousemouse

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1Q91Y21 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Pcdha1Q91Y21 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Pcdha1Q91Y21 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Pcdha1Q91Y21 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Pcdha1Q91Y21 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
Pcdha1Q91Y21 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Pcdha1Q91Y21 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC21.99■■□□□ 1.11
Pcdha1Q91Y21 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Pcdha1Q91Y21 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Pcdha1Q91Y21 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Pcdha1Q91Y21 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Pcdha1Q91Y21 Gm22238-201ENSMUST00000175222 88 ntBASIC21.98■■□□□ 1.11
Pcdha1Q91Y21 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC21.98■■□□□ 1.11
Pcdha1Q91Y21 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC21.98■■□□□ 1.11
Pcdha1Q91Y21 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Pcdha1Q91Y21 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Pcdha1Q91Y21 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
Pcdha1Q91Y21 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Pcdha1Q91Y21 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Pcdha1Q91Y21 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Pcdha1Q91Y21 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Pcdha1Q91Y21 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Pcdha1Q91Y21 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
Pcdha1Q91Y21 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Pcdha1Q91Y21 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC21.96■■□□□ 1.11
Pcdha1Q91Y21 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Pcdha1Q91Y21 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC21.96■■□□□ 1.11
Pcdha1Q91Y21 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
Pcdha1Q91Y21 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Pcdha1Q91Y21 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Pcdha1Q91Y21 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Pcdha1Q91Y21 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Pcdha1Q91Y21 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Pcdha1Q91Y21 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
Pcdha1Q91Y21 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Pcdha1Q91Y21 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC21.95■■□□□ 1.1
Pcdha1Q91Y21 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Pcdha1Q91Y21 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Pcdha1Q91Y21 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Pcdha1Q91Y21 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
Pcdha1Q91Y21 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.94■■□□□ 1.1
Pcdha1Q91Y21 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC21.94■■□□□ 1.1
Pcdha1Q91Y21 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Pcdha1Q91Y21 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Pcdha1Q91Y21 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Pcdha1Q91Y21 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Pcdha1Q91Y21 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Pcdha1Q91Y21 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Pcdha1Q91Y21 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Pcdha1Q91Y21 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC21.93■■□□□ 1.1
Pcdha1Q91Y21 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
Pcdha1Q91Y21 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC21.93■■□□□ 1.1
Pcdha1Q91Y21 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Pcdha1Q91Y21 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Pcdha1Q91Y21 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Pcdha1Q91Y21 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Pcdha1Q91Y21 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Pcdha1Q91Y21 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
Pcdha1Q91Y21 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.92■■□□□ 1.1
Pcdha1Q91Y21 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Pcdha1Q91Y21 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Pcdha1Q91Y21 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Pcdha1Q91Y21 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
Pcdha1Q91Y21 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Pcdha1Q91Y21 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Pcdha1Q91Y21 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
Pcdha1Q91Y21 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Pcdha1Q91Y21 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Pcdha1Q91Y21 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Pcdha1Q91Y21 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Pcdha1Q91Y21 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Pcdha1Q91Y21 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Pcdha1Q91Y21 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
Pcdha1Q91Y21 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Pcdha1Q91Y21 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Pcdha1Q91Y21 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Pcdha1Q91Y21 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
Pcdha1Q91Y21 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Pcdha1Q91Y21 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Pcdha1Q91Y21 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Pcdha1Q91Y21 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Pcdha1Q91Y21 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Pcdha1Q91Y21 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC21.89■■□□□ 1.09
Pcdha1Q91Y21 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC21.89■■□□□ 1.09
Pcdha1Q91Y21 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Pcdha1Q91Y21 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Pcdha1Q91Y21 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Pcdha1Q91Y21 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Pcdha1Q91Y21 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Pcdha1Q91Y21 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Pcdha1Q91Y21 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Pcdha1Q91Y21 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Pcdha1Q91Y21 Dmtn-209ENSMUST00000228295 2572 ntBASIC21.87■■□□□ 1.09
Pcdha1Q91Y21 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Pcdha1Q91Y21 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Pcdha1Q91Y21 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Pcdha1Q91Y21 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
Pcdha1Q91Y21 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Pcdha1Q91Y21 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Pcdha1Q91Y21 Gm10620-201ENSMUST00000098379 1332 ntBASIC21.86■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 187.2 ms