Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC23.62■■□□□ 1.37
Ushbp1Q8R370 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ushbp1Q8R370 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ushbp1Q8R370 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ushbp1Q8R370 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC23.62■■□□□ 1.37
Ushbp1Q8R370 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC23.62■■□□□ 1.37
Ushbp1Q8R370 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ushbp1Q8R370 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
Ushbp1Q8R370 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
Ushbp1Q8R370 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ushbp1Q8R370 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC23.61■■□□□ 1.37
Ushbp1Q8R370 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
Ushbp1Q8R370 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC23.61■■□□□ 1.37
Ushbp1Q8R370 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ushbp1Q8R370 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
Ushbp1Q8R370 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ushbp1Q8R370 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ushbp1Q8R370 Gm10232-201ENSMUST00000089221 720 ntBASIC23.6■■□□□ 1.37
Ushbp1Q8R370 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Ushbp1Q8R370 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Ushbp1Q8R370 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Ushbp1Q8R370 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Ushbp1Q8R370 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Ushbp1Q8R370 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC23.59■■□□□ 1.37
Ushbp1Q8R370 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Ushbp1Q8R370 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Ushbp1Q8R370 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Ushbp1Q8R370 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC23.58■■□□□ 1.37
Ushbp1Q8R370 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Ushbp1Q8R370 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Ushbp1Q8R370 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.36
Ushbp1Q8R370 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Ushbp1Q8R370 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Ushbp1Q8R370 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Ushbp1Q8R370 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
Ushbp1Q8R370 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Ushbp1Q8R370 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Ushbp1Q8R370 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Ushbp1Q8R370 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Ushbp1Q8R370 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Ushbp1Q8R370 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC23.56■■□□□ 1.36
Ushbp1Q8R370 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC23.56■■□□□ 1.36
Ushbp1Q8R370 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC23.56■■□□□ 1.36
Ushbp1Q8R370 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
Ushbp1Q8R370 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Ushbp1Q8R370 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Ushbp1Q8R370 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Ushbp1Q8R370 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Ushbp1Q8R370 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC23.54■■□□□ 1.36
Ushbp1Q8R370 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Ushbp1Q8R370 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Ushbp1Q8R370 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Ushbp1Q8R370 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Ushbp1Q8R370 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Ushbp1Q8R370 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Ushbp1Q8R370 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
Ushbp1Q8R370 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
Ushbp1Q8R370 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
Ushbp1Q8R370 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Ushbp1Q8R370 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Ushbp1Q8R370 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Ushbp1Q8R370 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
Ushbp1Q8R370 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Ushbp1Q8R370 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
Ushbp1Q8R370 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
Ushbp1Q8R370 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Ushbp1Q8R370 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC23.51■■□□□ 1.35
Ushbp1Q8R370 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC23.51■■□□□ 1.35
Ushbp1Q8R370 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
Ushbp1Q8R370 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Ushbp1Q8R370 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Ushbp1Q8R370 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Ushbp1Q8R370 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Ushbp1Q8R370 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Ushbp1Q8R370 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC23.49■■□□□ 1.35
Ushbp1Q8R370 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Ushbp1Q8R370 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Ushbp1Q8R370 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Ushbp1Q8R370 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Ushbp1Q8R370 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Ushbp1Q8R370 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Ushbp1Q8R370 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Ushbp1Q8R370 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC23.49■■□□□ 1.35
Ushbp1Q8R370 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC23.48■■□□□ 1.35
Ushbp1Q8R370 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Ushbp1Q8R370 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC23.48■■□□□ 1.35
Ushbp1Q8R370 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Ushbp1Q8R370 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Ushbp1Q8R370 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Ushbp1Q8R370 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC23.48■■□□□ 1.35
Ushbp1Q8R370 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Ushbp1Q8R370 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
Ushbp1Q8R370 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Ushbp1Q8R370 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC23.46■■□□□ 1.35
Ushbp1Q8R370 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
Ushbp1Q8R370 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Ushbp1Q8R370 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Ushbp1Q8R370 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Ushbp1Q8R370 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Ushbp1Q8R370 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms