Protein–RNA interactions for Protein: Q8R1N4

Nudcd3, NudC domain-containing protein 3, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nudcd3Q8R1N4 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nudcd3Q8R1N4 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nudcd3Q8R1N4 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nudcd3Q8R1N4 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Nudcd3Q8R1N4 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Nudcd3Q8R1N4 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Nudcd3Q8R1N4 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Nudcd3Q8R1N4 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Nudcd3Q8R1N4 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Nudcd3Q8R1N4 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nudcd3Q8R1N4 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nudcd3Q8R1N4 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nudcd3Q8R1N4 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nudcd3Q8R1N4 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.94■□□□□ 0.94
Nudcd3Q8R1N4 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nudcd3Q8R1N4 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nudcd3Q8R1N4 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nudcd3Q8R1N4 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nudcd3Q8R1N4 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.93■□□□□ 0.94
Nudcd3Q8R1N4 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nudcd3Q8R1N4 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Nudcd3Q8R1N4 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nudcd3Q8R1N4 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Nudcd3Q8R1N4 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nudcd3Q8R1N4 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.92■□□□□ 0.94
Nudcd3Q8R1N4 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nudcd3Q8R1N4 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nudcd3Q8R1N4 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nudcd3Q8R1N4 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nudcd3Q8R1N4 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC20.92■□□□□ 0.94
Nudcd3Q8R1N4 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nudcd3Q8R1N4 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.92■□□□□ 0.94
Nudcd3Q8R1N4 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Nudcd3Q8R1N4 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.92■□□□□ 0.94
Nudcd3Q8R1N4 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Nudcd3Q8R1N4 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nudcd3Q8R1N4 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Nudcd3Q8R1N4 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20.91■□□□□ 0.94
Nudcd3Q8R1N4 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Nudcd3Q8R1N4 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
Nudcd3Q8R1N4 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Nudcd3Q8R1N4 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Nudcd3Q8R1N4 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Nudcd3Q8R1N4 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Nudcd3Q8R1N4 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Nudcd3Q8R1N4 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Nudcd3Q8R1N4 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Nudcd3Q8R1N4 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Nudcd3Q8R1N4 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Nudcd3Q8R1N4 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Nudcd3Q8R1N4 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
Nudcd3Q8R1N4 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC20.9■□□□□ 0.94
Nudcd3Q8R1N4 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Nudcd3Q8R1N4 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Nudcd3Q8R1N4 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nudcd3Q8R1N4 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Nudcd3Q8R1N4 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC20.89■□□□□ 0.93
Nudcd3Q8R1N4 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nudcd3Q8R1N4 Gm6311-201ENSMUST00000073790 878 ntBASIC20.89■□□□□ 0.93
Nudcd3Q8R1N4 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Nudcd3Q8R1N4 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Nudcd3Q8R1N4 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Nudcd3Q8R1N4 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nudcd3Q8R1N4 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Nudcd3Q8R1N4 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nudcd3Q8R1N4 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nudcd3Q8R1N4 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Nudcd3Q8R1N4 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Nudcd3Q8R1N4 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nudcd3Q8R1N4 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Nudcd3Q8R1N4 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nudcd3Q8R1N4 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nudcd3Q8R1N4 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nudcd3Q8R1N4 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Nudcd3Q8R1N4 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nudcd3Q8R1N4 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nudcd3Q8R1N4 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nudcd3Q8R1N4 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nudcd3Q8R1N4 AC164883.3-201ENSMUST00000227396 1774 ntBASIC20.86■□□□□ 0.93
Nudcd3Q8R1N4 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nudcd3Q8R1N4 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nudcd3Q8R1N4 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nudcd3Q8R1N4 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Nudcd3Q8R1N4 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC20.84■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms