Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Six4Q61321 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Six4Q61321 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Six4Q61321 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.37■■□□□ 1.01
Six4Q61321 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Six4Q61321 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC21.37■■□□□ 1.01
Six4Q61321 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Six4Q61321 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Six4Q61321 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC21.36■■□□□ 1.01
Six4Q61321 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Six4Q61321 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC21.36■■□□□ 1.01
Six4Q61321 Gm15546-201ENSMUST00000122095 826 ntBASIC21.36■■□□□ 1.01
Six4Q61321 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Six4Q61321 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Six4Q61321 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Six4Q61321 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Six4Q61321 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Six4Q61321 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC21.35■■□□□ 1.01
Six4Q61321 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Six4Q61321 AC116713.1-201ENSMUST00000215074 430 ntBASIC21.34■■□□□ 1.01
Six4Q61321 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC21.34■■□□□ 1.01
Six4Q61321 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Six4Q61321 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Six4Q61321 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Six4Q61321 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Six4Q61321 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Six4Q61321 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Six4Q61321 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Six4Q61321 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Six4Q61321 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC21.33■■□□□ 1.01
Six4Q61321 Gm18755-201ENSMUST00000218030 1099 ntBASIC21.33■■□□□ 1.01
Six4Q61321 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Six4Q61321 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Six4Q61321 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC21.33■■□□□ 1
Six4Q61321 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Six4Q61321 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Six4Q61321 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Six4Q61321 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC21.31■■□□□ 1
Six4Q61321 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Six4Q61321 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC21.31■■□□□ 1
Six4Q61321 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Six4Q61321 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
Six4Q61321 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC21.3■■□□□ 1
Six4Q61321 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC21.3■■□□□ 1
Six4Q61321 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Six4Q61321 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Six4Q61321 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Six4Q61321 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC21.29■■□□□ 1
Six4Q61321 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Six4Q61321 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC21.28■■□□□ 1
Six4Q61321 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC21.28■■□□□ 1
Six4Q61321 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Six4Q61321 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Six4Q61321 Gm10620-201ENSMUST00000098379 1332 ntBASIC21.28■■□□□ 1
Six4Q61321 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Six4Q61321 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Six4Q61321 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Six4Q61321 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Six4Q61321 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC21.27■■□□□ 1
Six4Q61321 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Six4Q61321 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Six4Q61321 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Six4Q61321 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Six4Q61321 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
Six4Q61321 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Six4Q61321 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Six4Q61321 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Six4Q61321 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC21.26■□□□□ 0.99
Six4Q61321 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC21.26■□□□□ 0.99
Six4Q61321 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Six4Q61321 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Six4Q61321 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Six4Q61321 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Six4Q61321 Gm43403-201ENSMUST00000198011 1786 ntBASIC21.25■□□□□ 0.99
Six4Q61321 AC164883.3-201ENSMUST00000227396 1774 ntBASIC21.25■□□□□ 0.99
Six4Q61321 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Six4Q61321 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Six4Q61321 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Six4Q61321 Gm42501-201ENSMUST00000200220 1026 ntBASIC21.25■□□□□ 0.99
Six4Q61321 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Six4Q61321 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Six4Q61321 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Six4Q61321 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Six4Q61321 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC21.24■□□□□ 0.99
Six4Q61321 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Six4Q61321 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Six4Q61321 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC21.24■□□□□ 0.99
Six4Q61321 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Six4Q61321 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Six4Q61321 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Six4Q61321 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Six4Q61321 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Six4Q61321 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Six4Q61321 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Six4Q61321 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Six4Q61321 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Six4Q61321 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Six4Q61321 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Six4Q61321 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC21.22■□□□□ 0.99
Six4Q61321 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC21.22■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms