Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav5d-4Q5R1F6 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav5d-4Q5R1F6 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav5d-4Q5R1F6 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC18.06■□□□□ 0.48
Trav5d-4Q5R1F6 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Trav5d-4Q5R1F6 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Trav5d-4Q5R1F6 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav5d-4Q5R1F6 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav5d-4Q5R1F6 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav5d-4Q5R1F6 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav5d-4Q5R1F6 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav5d-4Q5R1F6 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav5d-4Q5R1F6 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
Trav5d-4Q5R1F6 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trav5d-4Q5R1F6 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trav5d-4Q5R1F6 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trav5d-4Q5R1F6 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trav5d-4Q5R1F6 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC18.04■□□□□ 0.48
Trav5d-4Q5R1F6 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trav5d-4Q5R1F6 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC18.04■□□□□ 0.48
Trav5d-4Q5R1F6 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Trav5d-4Q5R1F6 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trav5d-4Q5R1F6 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC18.03■□□□□ 0.48
Trav5d-4Q5R1F6 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC18.03■□□□□ 0.48
Trav5d-4Q5R1F6 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trav5d-4Q5R1F6 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trav5d-4Q5R1F6 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trav5d-4Q5R1F6 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
Trav5d-4Q5R1F6 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trav5d-4Q5R1F6 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trav5d-4Q5R1F6 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trav5d-4Q5R1F6 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trav5d-4Q5R1F6 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trav5d-4Q5R1F6 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC18.02■□□□□ 0.48
Trav5d-4Q5R1F6 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trav5d-4Q5R1F6 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC18.02■□□□□ 0.48
Trav5d-4Q5R1F6 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trav5d-4Q5R1F6 AC158990.1-201ENSMUST00000221450 2016 ntBASIC18.02■□□□□ 0.48
Trav5d-4Q5R1F6 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trav5d-4Q5R1F6 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC18.02■□□□□ 0.47
Trav5d-4Q5R1F6 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Trav5d-4Q5R1F6 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.47
Trav5d-4Q5R1F6 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trav5d-4Q5R1F6 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav5d-4Q5R1F6 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
Trav5d-4Q5R1F6 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav5d-4Q5R1F6 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav5d-4Q5R1F6 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trav5d-4Q5R1F6 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC18.01■□□□□ 0.47
Trav5d-4Q5R1F6 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav5d-4Q5R1F6 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Trav5d-4Q5R1F6 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC18■□□□□ 0.47
Trav5d-4Q5R1F6 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trav5d-4Q5R1F6 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav5d-4Q5R1F6 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Trav5d-4Q5R1F6 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trav5d-4Q5R1F6 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Trav5d-4Q5R1F6 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav5d-4Q5R1F6 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trav5d-4Q5R1F6 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Trav5d-4Q5R1F6 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav5d-4Q5R1F6 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav5d-4Q5R1F6 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav5d-4Q5R1F6 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Trav5d-4Q5R1F6 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trav5d-4Q5R1F6 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trav5d-4Q5R1F6 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav5d-4Q5R1F6 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Trav5d-4Q5R1F6 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trav5d-4Q5R1F6 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav5d-4Q5R1F6 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Trav5d-4Q5R1F6 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav5d-4Q5R1F6 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav5d-4Q5R1F6 Gm38160-201ENSMUST00000193090 2499 ntBASIC17.97■□□□□ 0.47
Trav5d-4Q5R1F6 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav5d-4Q5R1F6 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav5d-4Q5R1F6 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav5d-4Q5R1F6 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav5d-4Q5R1F6 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trav5d-4Q5R1F6 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav5d-4Q5R1F6 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav5d-4Q5R1F6 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Trav5d-4Q5R1F6 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Trav5d-4Q5R1F6 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav5d-4Q5R1F6 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav5d-4Q5R1F6 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav5d-4Q5R1F6 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav5d-4Q5R1F6 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC17.96■□□□□ 0.47
Trav5d-4Q5R1F6 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Trav5d-4Q5R1F6 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trav5d-4Q5R1F6 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC17.96■□□□□ 0.47
Trav5d-4Q5R1F6 Nsd1-203ENSMUST00000224156 1149 ntBASIC17.96■□□□□ 0.47
Trav5d-4Q5R1F6 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav5d-4Q5R1F6 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav5d-4Q5R1F6 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav5d-4Q5R1F6 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trav5d-4Q5R1F6 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav5d-4Q5R1F6 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trav5d-4Q5R1F6 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav5d-4Q5R1F6 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms