Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Gm9870-201ENSMUST00000063874 645 ntBASIC21.9■■□□□ 1.1
Sox1P53783 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Sox1P53783 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Sox1P53783 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Sox1P53783 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC21.89■■□□□ 1.09
Sox1P53783 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC21.89■■□□□ 1.09
Sox1P53783 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC21.89■■□□□ 1.09
Sox1P53783 Gm43060-201ENSMUST00000200621 289 ntBASIC21.89■■□□□ 1.09
Sox1P53783 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.09
Sox1P53783 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Sox1P53783 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Sox1P53783 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Sox1P53783 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Sox1P53783 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC21.87■■□□□ 1.09
Sox1P53783 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Sox1P53783 Gm5576-201ENSMUST00000075809 1236 ntBASIC21.87■■□□□ 1.09
Sox1P53783 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC21.87■■□□□ 1.09
Sox1P53783 AC153524.1-201ENSMUST00000220436 1935 ntBASIC21.86■■□□□ 1.09
Sox1P53783 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Sox1P53783 Gm10129-202ENSMUST00000193100 1316 ntBASIC21.86■■□□□ 1.09
Sox1P53783 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Sox1P53783 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Sox1P53783 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.86■■□□□ 1.09
Sox1P53783 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
Sox1P53783 Gm26833-201ENSMUST00000180899 440 ntBASIC21.86■■□□□ 1.09
Sox1P53783 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC21.86■■□□□ 1.09
Sox1P53783 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Sox1P53783 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
Sox1P53783 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC21.85■■□□□ 1.09
Sox1P53783 Gm10602-201ENSMUST00000098239 609 ntBASIC21.85■■□□□ 1.09
Sox1P53783 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Sox1P53783 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Sox1P53783 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
Sox1P53783 Nespas-201ENSMUST00000143738 1083 ntBASIC21.84■■□□□ 1.09
Sox1P53783 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC21.84■■□□□ 1.09
Sox1P53783 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Sox1P53783 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Sox1P53783 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC21.84■■□□□ 1.09
Sox1P53783 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Sox1P53783 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
Sox1P53783 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC21.83■■□□□ 1.09
Sox1P53783 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC21.83■■□□□ 1.09
Sox1P53783 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC21.83■■□□□ 1.09
Sox1P53783 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Sox1P53783 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Sox1P53783 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Sox1P53783 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Sox1P53783 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Sox1P53783 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Sox1P53783 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
Sox1P53783 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.81■■□□□ 1.08
Sox1P53783 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC21.8■■□□□ 1.08
Sox1P53783 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Sox1P53783 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Sox1P53783 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Sox1P53783 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
Sox1P53783 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Sox1P53783 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC21.8■■□□□ 1.08
Sox1P53783 AV356131-201ENSMUST00000206201 750 ntBASIC21.8■■□□□ 1.08
Sox1P53783 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC21.8■■□□□ 1.08
Sox1P53783 Gm10252-201ENSMUST00000209541 832 ntBASIC21.8■■□□□ 1.08
Sox1P53783 Gm18671-201ENSMUST00000214826 683 ntBASIC21.8■■□□□ 1.08
Sox1P53783 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC21.79■■□□□ 1.08
Sox1P53783 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Sox1P53783 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Sox1P53783 Gm10033-202ENSMUST00000211874 928 ntBASIC21.78■■□□□ 1.08
Sox1P53783 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Sox1P53783 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Sox1P53783 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Sox1P53783 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Sox1P53783 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Sox1P53783 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Sox1P53783 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Sox1P53783 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Sox1P53783 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Sox1P53783 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Sox1P53783 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Sox1P53783 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Sox1P53783 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Sox1P53783 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Sox1P53783 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Sox1P53783 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Sox1P53783 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Sox1P53783 Gm10657-201ENSMUST00000193528 1031 ntBASIC21.75■■□□□ 1.07
Sox1P53783 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Sox1P53783 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Sox1P53783 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Sox1P53783 AC117245.4-201ENSMUST00000217388 1646 ntBASIC21.75■■□□□ 1.07
Sox1P53783 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Sox1P53783 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Sox1P53783 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Sox1P53783 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Sox1P53783 Gm40848-201ENSMUST00000221998 324 ntBASIC21.74■■□□□ 1.07
Sox1P53783 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Sox1P53783 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Sox1P53783 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC21.74■■□□□ 1.07
Sox1P53783 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Sox1P53783 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Sox1P53783 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Sox1P53783 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 148.3 ms