Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lire1P11260 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lire1P11260 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Lire1P11260 Gm13238-201ENSMUST00000117655 780 ntBASIC19.59■□□□□ 0.73
Lire1P11260 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lire1P11260 Gm45102-201ENSMUST00000207427 857 ntBASIC19.59■□□□□ 0.73
Lire1P11260 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lire1P11260 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Lire1P11260 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Lire1P11260 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Lire1P11260 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lire1P11260 Gm15820-201ENSMUST00000201566 728 ntBASIC19.58■□□□□ 0.72
Lire1P11260 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Lire1P11260 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC19.58■□□□□ 0.72
Lire1P11260 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lire1P11260 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lire1P11260 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Lire1P11260 AC164433.2-201ENSMUST00000226346 1701 ntBASIC19.57■□□□□ 0.72
Lire1P11260 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC19.57■□□□□ 0.72
Lire1P11260 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Lire1P11260 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lire1P11260 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC19.57■□□□□ 0.72
Lire1P11260 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.57■□□□□ 0.72
Lire1P11260 Gm42501-201ENSMUST00000200220 1026 ntBASIC19.57■□□□□ 0.72
Lire1P11260 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Lire1P11260 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lire1P11260 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC19.57■□□□□ 0.72
Lire1P11260 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Lire1P11260 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lire1P11260 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lire1P11260 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lire1P11260 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lire1P11260 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC19.56■□□□□ 0.72
Lire1P11260 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lire1P11260 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lire1P11260 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Lire1P11260 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lire1P11260 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lire1P11260 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lire1P11260 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Lire1P11260 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lire1P11260 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lire1P11260 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lire1P11260 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Lire1P11260 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.54■□□□□ 0.72
Lire1P11260 Gm4430-201ENSMUST00000192413 1943 ntBASIC19.54■□□□□ 0.72
Lire1P11260 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lire1P11260 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lire1P11260 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lire1P11260 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lire1P11260 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
Lire1P11260 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lire1P11260 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Lire1P11260 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lire1P11260 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Lire1P11260 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lire1P11260 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Lire1P11260 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lire1P11260 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lire1P11260 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Lire1P11260 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Lire1P11260 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.52■□□□□ 0.72
Lire1P11260 Gm18755-201ENSMUST00000218030 1099 ntBASIC19.52■□□□□ 0.72
Lire1P11260 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lire1P11260 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lire1P11260 Gm6934-201ENSMUST00000194780 1905 ntBASIC19.52■□□□□ 0.72
Lire1P11260 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lire1P11260 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Lire1P11260 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Lire1P11260 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Lire1P11260 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Lire1P11260 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Lire1P11260 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lire1P11260 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC19.51■□□□□ 0.71
Lire1P11260 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Lire1P11260 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Lire1P11260 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lire1P11260 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Lire1P11260 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Lire1P11260 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Lire1P11260 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lire1P11260 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Lire1P11260 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lire1P11260 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lire1P11260 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lire1P11260 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC19.49■□□□□ 0.71
Lire1P11260 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Lire1P11260 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Lire1P11260 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lire1P11260 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lire1P11260 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.49■□□□□ 0.71
Lire1P11260 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC19.49■□□□□ 0.71
Lire1P11260 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Lire1P11260 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lire1P11260 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lire1P11260 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lire1P11260 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lire1P11260 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lire1P11260 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Lire1P11260 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms