Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lmx1bO88609 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
Lmx1bO88609 Gm40881-201ENSMUST00000223397 166 ntBASIC19.05■□□□□ 0.64
Lmx1bO88609 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lmx1bO88609 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lmx1bO88609 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Lmx1bO88609 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lmx1bO88609 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Lmx1bO88609 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
Lmx1bO88609 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Lmx1bO88609 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC19.04■□□□□ 0.64
Lmx1bO88609 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Lmx1bO88609 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Lmx1bO88609 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Lmx1bO88609 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Lmx1bO88609 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
Lmx1bO88609 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Lmx1bO88609 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC19.03■□□□□ 0.64
Lmx1bO88609 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Lmx1bO88609 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC19.03■□□□□ 0.64
Lmx1bO88609 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Lmx1bO88609 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Lmx1bO88609 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Lmx1bO88609 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Lmx1bO88609 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Lmx1bO88609 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC19.02■□□□□ 0.64
Lmx1bO88609 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Lmx1bO88609 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Lmx1bO88609 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC19.01■□□□□ 0.63
Lmx1bO88609 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lmx1bO88609 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Lmx1bO88609 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC19.01■□□□□ 0.63
Lmx1bO88609 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lmx1bO88609 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lmx1bO88609 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Lmx1bO88609 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Lmx1bO88609 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Lmx1bO88609 Gm15039-201ENSMUST00000118914 875 ntBASIC19■□□□□ 0.63
Lmx1bO88609 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC19■□□□□ 0.63
Lmx1bO88609 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lmx1bO88609 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lmx1bO88609 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Lmx1bO88609 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Lmx1bO88609 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
Lmx1bO88609 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lmx1bO88609 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lmx1bO88609 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC18.99■□□□□ 0.63
Lmx1bO88609 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Lmx1bO88609 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Lmx1bO88609 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC18.99■□□□□ 0.63
Lmx1bO88609 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Lmx1bO88609 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Lmx1bO88609 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Lmx1bO88609 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Lmx1bO88609 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC18.98■□□□□ 0.63
Lmx1bO88609 Gm10399-202ENSMUST00000202768 748 ntBASIC18.98■□□□□ 0.63
Lmx1bO88609 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Lmx1bO88609 Gm20634-201ENSMUST00000090779 2956 ntBASIC18.98■□□□□ 0.63
Lmx1bO88609 AC115037.1-201ENSMUST00000223391 2173 ntBASIC18.98■□□□□ 0.63
Lmx1bO88609 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lmx1bO88609 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lmx1bO88609 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Lmx1bO88609 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lmx1bO88609 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lmx1bO88609 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lmx1bO88609 Gm22238-201ENSMUST00000175222 88 ntBASIC18.97■□□□□ 0.63
Lmx1bO88609 Gm6277-202ENSMUST00000224036 2779 ntBASIC18.97■□□□□ 0.63
Lmx1bO88609 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC18.96■□□□□ 0.63
Lmx1bO88609 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC18.96■□□□□ 0.63
Lmx1bO88609 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC18.96■□□□□ 0.63
Lmx1bO88609 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Lmx1bO88609 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Lmx1bO88609 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Lmx1bO88609 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Lmx1bO88609 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Lmx1bO88609 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Lmx1bO88609 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
Lmx1bO88609 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Lmx1bO88609 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Lmx1bO88609 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Lmx1bO88609 AC153962.1-201ENSMUST00000218530 1948 ntBASIC18.95■□□□□ 0.62
Lmx1bO88609 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Lmx1bO88609 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Lmx1bO88609 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Lmx1bO88609 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Lmx1bO88609 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC18.94■□□□□ 0.62
Lmx1bO88609 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Lmx1bO88609 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Lmx1bO88609 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Lmx1bO88609 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Lmx1bO88609 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Lmx1bO88609 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Lmx1bO88609 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Lmx1bO88609 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Lmx1bO88609 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Lmx1bO88609 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
Lmx1bO88609 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Lmx1bO88609 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Lmx1bO88609 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Lmx1bO88609 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms