Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col6a4A2AX52 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col6a4A2AX52 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col6a4A2AX52 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col6a4A2AX52 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
Col6a4A2AX52 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col6a4A2AX52 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC17.79■□□□□ 0.44
Col6a4A2AX52 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col6a4A2AX52 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col6a4A2AX52 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Col6a4A2AX52 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col6a4A2AX52 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
Col6a4A2AX52 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col6a4A2AX52 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col6a4A2AX52 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
Col6a4A2AX52 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col6a4A2AX52 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col6a4A2AX52 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col6a4A2AX52 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
Col6a4A2AX52 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col6a4A2AX52 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col6a4A2AX52 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col6a4A2AX52 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.44
Col6a4A2AX52 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC17.77■□□□□ 0.44
Col6a4A2AX52 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC17.77■□□□□ 0.44
Col6a4A2AX52 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col6a4A2AX52 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col6a4A2AX52 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col6a4A2AX52 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col6a4A2AX52 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC17.77■□□□□ 0.43
Col6a4A2AX52 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col6a4A2AX52 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Col6a4A2AX52 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col6a4A2AX52 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Col6a4A2AX52 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col6a4A2AX52 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Col6a4A2AX52 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC17.76■□□□□ 0.43
Col6a4A2AX52 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC17.76■□□□□ 0.43
Col6a4A2AX52 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col6a4A2AX52 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col6a4A2AX52 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col6a4A2AX52 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col6a4A2AX52 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col6a4A2AX52 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col6a4A2AX52 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col6a4A2AX52 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
Col6a4A2AX52 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col6a4A2AX52 AC158990.1-201ENSMUST00000221450 2016 ntBASIC17.75■□□□□ 0.43
Col6a4A2AX52 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col6a4A2AX52 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col6a4A2AX52 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Col6a4A2AX52 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col6a4A2AX52 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col6a4A2AX52 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col6a4A2AX52 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
Col6a4A2AX52 Wdr70-203ENSMUST00000227371 1130 ntBASIC17.74■□□□□ 0.43
Col6a4A2AX52 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col6a4A2AX52 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col6a4A2AX52 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC17.73■□□□□ 0.43
Col6a4A2AX52 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col6a4A2AX52 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col6a4A2AX52 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Col6a4A2AX52 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Col6a4A2AX52 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Col6a4A2AX52 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC17.72■□□□□ 0.43
Col6a4A2AX52 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col6a4A2AX52 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC17.72■□□□□ 0.43
Col6a4A2AX52 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col6a4A2AX52 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col6a4A2AX52 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col6a4A2AX52 Gm27405-201ENSMUST00000184201 112 ntBASIC17.72■□□□□ 0.43
Col6a4A2AX52 Gm43017-201ENSMUST00000198296 752 ntBASIC17.72■□□□□ 0.43
Col6a4A2AX52 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col6a4A2AX52 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col6a4A2AX52 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col6a4A2AX52 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Col6a4A2AX52 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col6a4A2AX52 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col6a4A2AX52 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC17.71■□□□□ 0.43
Col6a4A2AX52 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Col6a4A2AX52 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col6a4A2AX52 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC17.71■□□□□ 0.43
Col6a4A2AX52 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC17.71■□□□□ 0.43
Col6a4A2AX52 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col6a4A2AX52 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col6a4A2AX52 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col6a4A2AX52 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col6a4A2AX52 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col6a4A2AX52 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC17.71■□□□□ 0.43
Col6a4A2AX52 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col6a4A2AX52 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col6a4A2AX52 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC17.7■□□□□ 0.42
Col6a4A2AX52 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col6a4A2AX52 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC17.7■□□□□ 0.42
Col6a4A2AX52 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col6a4A2AX52 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col6a4A2AX52 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC17.7■□□□□ 0.42
Col6a4A2AX52 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Col6a4A2AX52 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC17.69■□□□□ 0.42
Col6a4A2AX52 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms