Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Trim56Q80VI1 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Gm14760-201ENSMUST00000121831 999 ntBASIC14.96□□□□□ -0.01
Trim56Q80VI1 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC14.96□□□□□ -0.01
Trim56Q80VI1 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Gm7584-201ENSMUST00000175829 940 ntBASIC14.96□□□□□ -0.01
Trim56Q80VI1 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC14.96□□□□□ -0.01
Trim56Q80VI1 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC14.96□□□□□ -0.01
Trim56Q80VI1 AC123834.1-201ENSMUST00000225346 2043 ntBASIC14.96□□□□□ -0.01
Trim56Q80VI1 AC125209.1-201ENSMUST00000225812 766 ntBASIC14.96□□□□□ -0.01
Trim56Q80VI1 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
Trim56Q80VI1 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
Trim56Q80VI1 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
Trim56Q80VI1 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Trim56Q80VI1 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Trim56Q80VI1 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Trim56Q80VI1 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Gm25043-201ENSMUST00000158604 212 ntBASIC14.95□□□□□ -0.02
Trim56Q80VI1 Gm5597-201ENSMUST00000182353 1193 ntBASIC14.95□□□□□ -0.02
Trim56Q80VI1 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Gm38341-201ENSMUST00000195357 515 ntBASIC14.95□□□□□ -0.02
Trim56Q80VI1 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 CT025533.2-201ENSMUST00000228715 1248 ntBASIC14.95□□□□□ -0.02
Trim56Q80VI1 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC14.95□□□□□ -0.02
Trim56Q80VI1 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Gm38385-201ENSMUST00000194454 2351 ntBASIC14.95□□□□□ -0.02
Trim56Q80VI1 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim56Q80VI1 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms