Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Trim28Q62318 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC16.39■□□□□ 0.21
Trim28Q62318 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC16.38■□□□□ 0.21
Trim28Q62318 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Trim28Q62318 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Gm44942-201ENSMUST00000096093 2072 ntBASIC16.38■□□□□ 0.21
Trim28Q62318 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim28Q62318 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
Trim28Q62318 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim28Q62318 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC16.38■□□□□ 0.21
Trim28Q62318 Gm14277-201ENSMUST00000121195 360 ntBASIC16.38■□□□□ 0.21
Trim28Q62318 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim28Q62318 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim28Q62318 Gm21027-201ENSMUST00000219300 1236 ntBASIC16.38■□□□□ 0.21
Trim28Q62318 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim28Q62318 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim28Q62318 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Trim28Q62318 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Trim28Q62318 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim28Q62318 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim28Q62318 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC16.38■□□□□ 0.21
Trim28Q62318 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC16.37■□□□□ 0.21
Trim28Q62318 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC16.37■□□□□ 0.21
Trim28Q62318 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC16.37■□□□□ 0.21
Trim28Q62318 Gm27552-201ENSMUST00000183351 62 ntBASIC16.37■□□□□ 0.21
Trim28Q62318 Gm27844-201ENSMUST00000183613 62 ntBASIC16.37■□□□□ 0.21
Trim28Q62318 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 AC153974.2-201ENSMUST00000218577 1025 ntBASIC16.37■□□□□ 0.21
Trim28Q62318 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Gm4735-201ENSMUST00000138679 1302 ntBASIC16.37■□□□□ 0.21
Trim28Q62318 Gm5855-201ENSMUST00000200240 1305 ntBASIC16.37■□□□□ 0.21
Trim28Q62318 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim28Q62318 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trim28Q62318 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim28Q62318 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim28Q62318 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim28Q62318 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim28Q62318 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim28Q62318 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Trim28Q62318 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim28Q62318 Gm12380-201ENSMUST00000119012 544 ntBASIC16.36■□□□□ 0.21
Trim28Q62318 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Trim28Q62318 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Trim28Q62318 AC107638.1-201ENSMUST00000213690 1061 ntBASIC16.36■□□□□ 0.21
Trim28Q62318 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim28Q62318 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC16.36■□□□□ 0.21
Trim28Q62318 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
Trim28Q62318 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim28Q62318 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim28Q62318 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim28Q62318 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Trim28Q62318 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trim28Q62318 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC16.36■□□□□ 0.21
Trim28Q62318 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim28Q62318 CU062626.3-201ENSMUST00000225522 1411 ntBASIC16.36■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms